Source: libfreecontact-perl Version: 0.08-2 Severity: serious Justification: fails to build from source
Dear Maintainer, libfreecontact-perl fails to build from source on unstable/amd64: [..] Failed 3/3 subtests # Failed test 'use FreeContact;' # at t/02test.t line 6. # Tried to use 'FreeContact'. # Error: Can't load '/tmp/buildd/libfreecontact-perl-0.08/blib/arch/auto/FreeContact/FreeContact.so' for module FreeContact: /tmp/buildd/libfreecontact-perl-0.08/blib/arch/auto/FreeContact/FreeContact.so: undefined symbol: _ZN11freecontact9predictor3runERKNS_5ali_tERKSt6vectorIdSaIdEEdddtddbdbbdilPSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEdSt4lessISF_ESaISt4pairIKSF_dEEE at /usr/lib/x86_64-linux-gnu/perl/5.20/DynaLoader.pm line 187. # at t/02test.t line 6. # Compilation failed in require at t/02test.t line 6. # BEGIN failed--compilation aborted at t/02test.t line 6. Can't locate object method "_new" via package "FreeContact::Predictor" at /tmp/buildd/libfreecontact-perl-0.08/blib/lib/FreeContact.pm line 50. # Looks like you planned 10 tests but ran 1. [..] The full build log is attached or can be viewed here: https://reproducible.debian.net/rbuild/unstable/amd64/libfreecontact-perl_0.08-2.rbuild.log.gz Regards, -- ,''`. : :' : Chris Lamb `. `'` la...@debian.org / chris-lamb.co.uk `-
Starting to build libfreecontact-perl/unstable on 2015-08-10 19:26 The jenkins build log is/was available at https://jenkins.debian.net/job/reproducible_builder_zeta/25426/console Reading package lists... Building dependency tree... Reading state information... NOTICE: 'libfreecontact-perl' packaging is maintained in the 'Git' version control system at: git://anonscm.debian.org/debian-med/libfreecontact-perl.git Need to get 63.2 kB of source archives. Get:1 http://ftp.de.debian.org/debian/ unstable/main libfreecontact-perl 0.08-2 (dsc) [2079 B] Get:2 http://ftp.de.debian.org/debian/ unstable/main libfreecontact-perl 0.08-2 (tar) [58.7 kB] Get:3 http://ftp.de.debian.org/debian/ unstable/main libfreecontact-perl 0.08-2 (diff) [2477 B] Fetched 63.2 kB in 0s (274 kB/s) Download complete and in download only mode -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Format: 3.0 (quilt) Source: libfreecontact-perl Binary: libfreecontact-perl Architecture: any Version: 0.08-2 Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Uploaders: Laszlo Kajan <lka...@rostlab.org> Homepage: http://rostlab.org/ Standards-Version: 3.9.4 Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-med/libfreecontact-perl.git Vcs-Git: git://anonscm.debian.org/debian-med/libfreecontact-perl.git Build-Depends: debhelper (>= 9.0.0), libextutils-xspp-perl, libfreecontact0-dev (>= 1.0.21-1~), perl Package-List: libfreecontact-perl deb perl extra Checksums-Sha1: dea098c8025b42e79227265dd74252ceedbfa007 58672 libfreecontact-perl_0.08.orig.tar.gz acb37c09d3a6e3d667f12c7832761c0045b084a1 2477 libfreecontact-perl_0.08-2.debian.tar.gz Checksums-Sha256: 7386762985b9e36ec13379948528f1f18e49cf799ba5436a46aa60e9cb041911 58672 libfreecontact-perl_0.08.orig.tar.gz d0ecf233da20d826c6e4efb465c3d837e1bbf48d7dbc59cb6117424d5969fe46 2477 libfreecontact-perl_0.08-2.debian.tar.gz Files: 798e25cfc3954e027d208f62dd3fe6ea 58672 libfreecontact-perl_0.08.orig.tar.gz 93cde55bc0aa93b788d6a9e1c08efdcb 2477 libfreecontact-perl_0.08-2.debian.tar.gz -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.14 (GNU/Linux) iQIcBAEBAgAGBQJSR0I1AAoJEJvS1kCaDFL602wP/jYPqkx7+ELF38iFBvZLMDi8 xlCRBXEfXkNNWISBoTqHT4OQde/TBvai6OYjGy+rylX4e1UOfOP7RFP3yKfWYWtg MMbNuOmSa9lKpLJlMnXy7p60z4zj1HQhQ2gJX1pegUzOSok9eFUN5Xb3d/8S4l75 3YMCIS5tbLdu4rQdCb1QE6kUmCE63CCkJ31Et7dafQ3sqSRfRqfDcpCRiRSqJQ8p 6e2zSy5x3AnicxUnbgiGaDdak6iXwDa4n3g7RdOYLrZ9lWOnCvln7y2gyH9sxWo8 4N7YOVXvKRoZ8gNFiPw4ztUKyORam8iyhRTxtVpTN14j+30JVRY9J99GvQDzNUbF vVzu3el8wrV/5n1yL+caU96CpMwcphgmvNJk2dsB7/VgKHVHHbu6sDNLWsanB09M 4j/TdtHlkKLpvWq3JQXhT3l9AysuKDEV36w48JIH5ftwzy6cGo0/EU6HGFwpphF/ 1sNt1Lh1svv5J67bXV7n2hQHd9N+68mmuZGEwHMiiUrltYv7qcT0s49Oz4cermRH KUtF/L2KLrMjCB6rd29S/lVduglBFS8b53Ua56EELHlPVt0rnU7Z9HwFUs/BJvrw SYuxYn0nnSwcBmAZoAJvEIl+iW/krcDGklEmX3MJgkzmjJqI1mqDLG5+zLqKhoO+ 8pEpVW+RPgDUcGXjpWuh =yIef -----END PGP SIGNATURE----- + sudo timeout -k 12.1h 12h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/tmp.jbuDJd2yb8/pbuilderrc_0kfa --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult b1 --logfile b1/build.log libfreecontact-perl_0.08-2.dsc W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: using fakeroot in build. I: pbuilder: network access will be disabled during build I: Current time: Mon Aug 10 07:26:09 GMT+12 2015 I: pbuilder-time-stamp: 1439234769 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: creating local configuration I: copying local configuration I: mounting /proc filesystem I: mounting /run/shm filesystem I: mounting /dev/pts filesystem I: Mounting /dev/shm I: Mounting /sys I: policy-rc.d already exists I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team <pbuilder-ma...@lists.alioth.debian.org> Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 9.0.0), libextutils-xspp-perl, libfreecontact0-dev (>= 1.0.21-1~), perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20247 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on libextutils-xspp-perl; however: Package libextutils-xspp-perl is not installed. pbuilder-satisfydepends-dummy depends on libfreecontact0-dev (>= 1.0.21-1~); however: Package libfreecontact0-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... The following NEW packages will be installed: libblas-common{a} libblas3{a} libextutils-xspp-perl{a} libfreecontact0{a} libfreecontact0-dev{a} libgfortran3{a} liblapack3{a} 0 packages upgraded, 7 newly installed, 0 to remove and 0 not upgraded. Need to get 2648 kB of archives. After unpacking 9062 kB will be used. Writing extended state information... Get: 1 http://ftp.de.debian.org/debian/ unstable/main libgfortran3 amd64 5.2.1-15 [253 kB] Get: 2 http://ftp.de.debian.org/debian/ unstable/main libblas-common amd64 1.2.20110419-10 [8496 B] Get: 3 http://ftp.de.debian.org/debian/ unstable/main libblas3 amd64 1.2.20110419-10 [167 kB] Get: 4 http://ftp.de.debian.org/debian/ unstable/main liblapack3 amd64 3.5.0-4 [1852 kB] Get: 5 http://ftp.de.debian.org/debian/ unstable/main libfreecontact0 amd64 1.0.21-3+b1 [85.9 kB] Get: 6 http://ftp.de.debian.org/debian/ unstable/main libextutils-xspp-perl all 0.1800-2 [191 kB] Get: 7 http://ftp.de.debian.org/debian/ unstable/main libfreecontact0-dev amd64 1.0.21-3+b1 [90.6 kB] Fetched 2648 kB in 0s (12.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libgfortran3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20247 files and directories currently installed.) Preparing to unpack .../libgfortran3_5.2.1-15_amd64.deb ... Unpacking libgfortran3:amd64 (5.2.1-15) ... Selecting previously unselected package libblas-common. Preparing to unpack .../libblas-common_1.2.20110419-10_amd64.deb ... Unpacking libblas-common (1.2.20110419-10) ... Selecting previously unselected package libblas3. Preparing to unpack .../libblas3_1.2.20110419-10_amd64.deb ... Unpacking libblas3 (1.2.20110419-10) ... Selecting previously unselected package liblapack3. Preparing to unpack .../liblapack3_3.5.0-4_amd64.deb ... Unpacking liblapack3 (3.5.0-4) ... Selecting previously unselected package libfreecontact0. Preparing to unpack .../libfreecontact0_1.0.21-3+b1_amd64.deb ... Unpacking libfreecontact0 (1.0.21-3+b1) ... Selecting previously unselected package libextutils-xspp-perl. Preparing to unpack .../libextutils-xspp-perl_0.1800-2_all.deb ... Unpacking libextutils-xspp-perl (0.1800-2) ... Selecting previously unselected package libfreecontact0-dev. Preparing to unpack .../libfreecontact0-dev_1.0.21-3+b1_amd64.deb ... Unpacking libfreecontact0-dev (1.0.21-3+b1) ... Processing triggers for man-db (2.7.0.2-5) ... Setting up libgfortran3:amd64 (5.2.1-15) ... Setting up libblas-common (1.2.20110419-10) ... Setting up libblas3 (1.2.20110419-10) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up liblapack3 (3.5.0-4) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libfreecontact0 (1.0.21-3+b1) ... Setting up libextutils-xspp-perl (0.1800-2) ... Setting up libfreecontact0-dev (1.0.21-3+b1) ... Processing triggers for libc-bin (2.19-19) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Copying source file I: copying [libfreecontact-perl_0.08-2.dsc] I: copying [./libfreecontact-perl_0.08.orig.tar.gz] I: copying [./libfreecontact-perl_0.08-2.debian.tar.gz] I: Extracting source gpgv: keyblock resource `/tmp/buildd/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Sat Sep 28 08:55:17 2013 GMT+12 using RSA key ID 9A0C52FA gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./libfreecontact-perl_0.08-2.dsc dpkg-source: info: extracting libfreecontact-perl in libfreecontact-perl-0.08 dpkg-source: info: unpacking libfreecontact-perl_0.08.orig.tar.gz dpkg-source: info: unpacking libfreecontact-perl_0.08-2.debian.tar.gz I: Building the package I: Running cd tmp/buildd/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" dpkg-buildpackage -us -uc -b -rfakeroot dpkg-buildpackage: source package libfreecontact-perl dpkg-buildpackage: source version 0.08-2 dpkg-buildpackage: source distribution unstable dpkg-buildpackage: source changed by Laszlo Kajan <lka...@rostlab.org> dpkg-source --before-build libfreecontact-perl-0.08 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean --parallel dh_testdir -O--parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/tmp/buildd/libfreecontact-perl-0.08' rm -f Makefile.old dh_auto_clean make[1]: Leaving directory '/tmp/buildd/libfreecontact-perl-0.08' dh_clean -O--parallel debian/rules build dh build --parallel dh_testdir -O--parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/tmp/buildd/libfreecontact-perl-0.08' dh_auto_configure -- OPTIMIZE="-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security" LD="'cc' -Wl,-z,relro" perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro" "OPTIMIZE=-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security" "LD='cc' -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for FreeContact Writing MYMETA.yml and MYMETA.json make[1]: Leaving directory '/tmp/buildd/libfreecontact-perl-0.08' dh_auto_build -O--parallel make -j23 make[1]: Entering directory '/tmp/buildd/libfreecontact-perl-0.08' /usr/bin/perl /usr/share/perl/5.20/ExtUtils/xsubpp -C++ -hiertype -noprototypes -typemap /usr/share/perl/5.20/ExtUtils/typemap -typemap perlobject.map -typemap typemap -typemap typemap FreeContact.xs > FreeContact.xsc && mv FreeContact.xsc FreeContact.c Running Mkbootstrap for FreeContact () chmod 644 FreeContact.bs cp lib/FreeContact.pm blib/lib/FreeContact.pm AutoSplitting blib/lib/FreeContact.pm (blib/lib/auto/FreeContact) g++ -c -I. -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -DVERSION=\"0.08\" -DXS_VERSION=\"0.08\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.20/CORE" FreeContact.c rm -f blib/arch/auto/FreeContact/FreeContact.so 'cc' -Wl,-z,relro -shared -L/usr/local/lib -fstack-protector FreeContact.o -o blib/arch/auto/FreeContact/FreeContact.so \ -lfreecontact \ chmod 755 blib/arch/auto/FreeContact/FreeContact.so /usr/bin/perl -MExtUtils::Command::MM -e 'cp_nonempty' -- FreeContact.bs blib/arch/auto/FreeContact/FreeContact.bs 644 Manifying blib/man3/FreeContact.3pm make[1]: Leaving directory '/tmp/buildd/libfreecontact-perl-0.08' dh_auto_test -O--parallel make -j23 test TEST_VERBOSE=1 make[1]: Entering directory '/tmp/buildd/libfreecontact-perl-0.08' Running Mkbootstrap for FreeContact () chmod 644 FreeContact.bs PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t # Failed test 'use FreeContact;' # at t/01FreeContact.t line 9. # Tried to use 'FreeContact'. # Error: Can't load '/tmp/buildd/libfreecontact-perl-0.08/blib/arch/auto/FreeContact/FreeContact.so' for module FreeContact: /tmp/buildd/libfreecontact-perl-0.08/blib/arch/auto/FreeContact/FreeContact.so: undefined symbol: _ZN11freecontact9predictor3runERKNS_5ali_tERKSt6vectorIdSaIdEEdddtddbdbbdilPSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEdSt4lessISF_ESaISt4pairIKSF_dEEE at /usr/lib/x86_64-linux-gnu/perl/5.20/DynaLoader.pm line 187. # at t/01FreeContact.t line 9. # Compilation failed in require at t/01FreeContact.t line 9. # BEGIN failed--compilation aborted at t/01FreeContact.t line 9. # Failed test 'FreeContact->can(...)' # at t/01FreeContact.t line 17. # FreeContact->can('get_ps_evfold') failed # FreeContact->can('get_ps_psicov') failed # FreeContact->can('get_ps_psicov_sd') failed # Failed test 'FreeContact::Predictor->can(...)' # at t/01FreeContact.t line 18. # FreeContact::Predictor->can('_get_seq_weights') failed # FreeContact::Predictor->can('_run') failed # Looks like you failed 3 tests of 3. t/01FreeContact.t .. 1..3 not ok 1 - use FreeContact; not ok 2 - FreeContact->can(...) not ok 3 - FreeContact::Predictor->can(...) Dubious, test returned 3 (wstat 768, 0x300) Failed 3/3 subtests # Failed test 'use FreeContact;' # at t/02test.t line 6. # Tried to use 'FreeContact'. # Error: Can't load '/tmp/buildd/libfreecontact-perl-0.08/blib/arch/auto/FreeContact/FreeContact.so' for module FreeContact: /tmp/buildd/libfreecontact-perl-0.08/blib/arch/auto/FreeContact/FreeContact.so: undefined symbol: _ZN11freecontact9predictor3runERKNS_5ali_tERKSt6vectorIdSaIdEEdddtddbdbbdilPSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEdSt4lessISF_ESaISt4pairIKSF_dEEE at /usr/lib/x86_64-linux-gnu/perl/5.20/DynaLoader.pm line 187. # at t/02test.t line 6. # Compilation failed in require at t/02test.t line 6. # BEGIN failed--compilation aborted at t/02test.t line 6. Can't locate object method "_new" via package "FreeContact::Predictor" at /tmp/buildd/libfreecontact-perl-0.08/blib/lib/FreeContact.pm line 50. # Looks like you planned 10 tests but ran 1. # Looks like you failed 1 test of 1 run. # Looks like your test exited with 255 just after 1. t/02test.t ......... 1..10 not ok 1 - use FreeContact; Dubious, test returned 255 (wstat 65280, 0xff00) Failed 10/10 subtests Test Summary Report ------------------- t/01FreeContact.t (Wstat: 768 Tests: 3 Failed: 3) Failed tests: 1-3 Non-zero exit status: 3 t/02test.t (Wstat: 65280 Tests: 1 Failed: 1) Failed test: 1 Non-zero exit status: 255 Parse errors: Bad plan. You planned 10 tests but ran 1. Files=2, Tests=4, 0 wallclock secs ( 0.04 usr 0.01 sys + 0.11 cusr 0.03 csys = 0.19 CPU) Result: FAIL Failed 2/2 test programs. 4/4 subtests failed. Makefile:992: recipe for target 'test_dynamic' failed make[1]: *** [test_dynamic] Error 255 make[1]: Leaving directory '/tmp/buildd/libfreecontact-perl-0.08' dh_auto_test: make -j23 test TEST_VERBOSE=1 returned exit code 2 debian/rules:30: recipe for target 'build' failed make: *** [build] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2 E: Failed autobuilding of package I: unmounting /sys filesystem I: unmounting /dev/shm filesystem I: unmounting dev/pts filesystem I: unmounting run/shm filesystem I: unmounting proc filesystem I: cleaning the build env I: removing directory /var/cache/pbuilder/build//15954 and its subdirectories Warning: No second build log
