Your message dated Wed, 29 Jul 2015 10:00:13 +0000 with message-id <e1zko9l-0006cs...@franck.debian.org> and subject line Bug#777772: fixed in apophenia 0.999e+ds-1 has caused the Debian Bug report #777772, regarding apophenia: ftbfs with GCC-5 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 777772: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=777772 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:apophenia Version: 0.999b+ds3-2 Severity: normal Tags: sid stretch User: debian-...@lists.debian.org Usertags: ftbfs-gcc-5 Please keep this issue open in the bug tracker for the package it was filed for. If a fix in another package is required, please file a bug for the other package (or clone), and add a block in this package. Please keep the issue open until the package can be built in a follow-up test rebuild. The package fails to build in a test rebuild on at least amd64 with gcc-5/g++-5, but succeeds to build with gcc-4.9/g++-4.9. The severity of this report may be raised before the stretch release. The full build log can be found at: http://people.debian.org/~doko/logs/gcc5-20150205/apophenia_0.999b+ds3-2_unstable_gcc5.log The last lines of the build log are at the end of this report. To build with GCC 5, either set CC=gcc-5 CXX=g++-5 explicitly, or install the gcc, g++, gfortran, ... packages from experimental. apt-get -t experimental install g++ Common build failures are C11 as the default C mode, new warnings resulting in build failures with -Werror turned on, or new/dropped symbols in Debian symbols files. For other C/C++ related build failures see the porting guide at http://gcc.gnu.org/gcc-5/porting_to.html [...] checking for memset... yes checking for pow... no checking for regcomp... yes checking for sqrt... no checking for strcasecmp... yes checking for asprintf... yes checking for bc... /usr/bin/bc checking for sqlite3... /usr/bin/sqlite3 checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating apophenia.pc config.status: creating Makefile config.status: creating transform/Makefile config.status: creating model/Makefile config.status: creating cmd/Makefile config.status: creating tests/Makefile config.status: creating docs/doxygen.conf config.status: creating docs/Makefile config.status: creating eg/Makefile config.status: creating tests/utilities_test config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands make[1]: Leaving directory '/«BUILDDIR»/apophenia-0.999b+ds3' dh_auto_build -a make[1]: Entering directory '/«BUILDDIR»/apophenia-0.999b+ds3' make all-recursive make[2]: Entering directory '/«BUILDDIR»/apophenia-0.999b+ds3' Making all in transform make[3]: Entering directory '/«BUILDDIR»/apophenia-0.999b+ds3/transform' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -I .. -pthread -fopenmp -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -c -o libapoptransform_la-apop_dcompose.lo `test -f 'apop_dcompose.c' || echo './'`apop_dcompose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -I .. -pthread -fopenmp -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -c apop_dcompose.c -fPIC -DPIC -o .libs/libapoptransform_la-apop_dcompose.o In file included from ../apop_internal.h:83:0, from apop_dcompose.c:1: ../apop.h:153:9: sorry, unimplemented: '_Atomic' with OpenMP _Atomic(int) rng_seed; ^ make[3]: *** [libapoptransform_la-apop_dcompose.lo] Error 1 Makefile:414: recipe for target 'libapoptransform_la-apop_dcompose.lo' failed make[3]: Leaving directory '/«BUILDDIR»/apophenia-0.999b+ds3/transform' make[2]: *** [all-recursive] Error 1 Makefile:922: recipe for target 'all-recursive' failed make[2]: Leaving directory '/«BUILDDIR»/apophenia-0.999b+ds3' make[1]: *** [all] Error 2 Makefile:519: recipe for target 'all' failed make[1]: Leaving directory '/«BUILDDIR»/apophenia-0.999b+ds3' dh_auto_build: make -j1 returned exit code 2 make: *** [build-arch] Error 2 debian/rules:20: recipe for target 'build-arch' failed dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2
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--- Begin Message ---Source: apophenia Source-Version: 0.999e+ds-1 We believe that the bug you reported is fixed in the latest version of apophenia, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 777...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Jerome Benoit <calcu...@rezozer.net> (supplier of updated apophenia package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Tue, 28 Jul 2015 17:31:35 +0000 Source: apophenia Binary: libapophenia2 libapophenia2-dev apophenia-bin libapophenia2-dbg apophenia-doc Architecture: source amd64 all Version: 0.999e+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers <debian-science-maintain...@lists.alioth.debian.org> Changed-By: Jerome Benoit <calcu...@rezozer.net> Description: apophenia-bin - Apophenia Statistical C Library -- binary package apophenia-doc - Apophenia Statistical C Library -- reference manual libapophenia2 - Apophenia Statistical C Library -- library package libapophenia2-dbg - Apophenia Statistical C Library -- debug symbols package libapophenia2-dev - Apophenia Statistical C Library -- development package Closes: 777772 781566 788868 Changes: apophenia (0.999e+ds-1) unstable; urgency=medium . * Uploads to unstable. * New upstream version (Closes: #777772, #781566). * Debianization: - debian/copyright: - repack by using the Files-Excluded machinery instead of the ad-hoc script debian/repack; - refine; - update; - debian/repack, discard (see above); - debian/watch, revisit (see above); - debian/patches/debianization-documentation.patch, render the build reproducible by removing $date (Closes: #788868); - debian/patches/debianization-bug-597187_757967-mysql_config.patch, harden; - debian/patches/upstream-*.patch, remove since they were integrated; - debian/rules, clean up; - debian/clean, drop off. 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