Le Thu, Jun 18, 2015 at 11:25:46PM -0400, Aaron M. Ucko a écrit :
>
> I'm glad to see those platforms are doing better now, but that was only
> part of the problem. There are still unexpected failures on i386 and
> kfreebsd-i386 (though the count's dropped from 95 to 2, a big improvement):
>
> UNEXPECTED FAIL: Output mismatch for $samtools mpileup -x -F 0.60 -u -f
> mpileup.ref.fa indels.bam|$filter|awk '/INDEL/'
>
> See FAIL-59.out.1 vs expected/59.out
> UNEXPECTED FAIL: Output mismatch for $samtools mpileup -x -F 0.60 -u -f
> mpileup.ref.fa indels.cram|$filter|awk '/INDEL/'
>
> See FAIL-59.out.2 vs expected/59.out
>
> Could you please look into them as well?
Hi Aaron,
failures on 32-bits platforms are expected to be fixed in the next upstream
release.
https://github.com/samtools/samtools/issues/305
I propose to wait for it. But if need is, it may be possible to backport the
patches.
Cheers,
--
Charles
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