Source: python-biopython
Version: 1.64+dfsg-5
Severity: serious
Tags: jessie sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20150117 qa-ftbfs
Justification: FTBFS in jessie on amd64
Hi,
During a rebuild of all packages in jessie (in a jessie chroot, not a
sid chroot), your package failed to build on amd64.
Relevant part (hopefully):
> E: pybuild pybuild:256: test: plugin custom failed with: exit code=1: set -e;
> \
> mkdir -p
> /«BUILDDIR»/python-biopython-1.64+dfsg/.pybuild/pythonX.Y_2.7/build/home; \
> mkdir -p
> /«BUILDDIR»/python-biopython-1.64+dfsg/.pybuild/pythonX.Y_2.7/build/Doc; \
> cp -a Doc/Tutorial.tex
> /«BUILDDIR»/python-biopython-1.64+dfsg/.pybuild/pythonX.Y_2.7/build/Doc; \
> cp -a Tests
> /«BUILDDIR»/python-biopython-1.64+dfsg/.pybuild/pythonX.Y_2.7/build; \
> cd
> /«BUILDDIR»/python-biopython-1.64+dfsg/.pybuild/pythonX.Y_2.7/build/Tests; \
> env DIALIGN2_DIR=/usr/share/dialign
> EMBOSS_ROOT=/usr/lib/emboss
> HOME=/«BUILDDIR»/python-biopython-1.64+dfsg/.pybuild/pythonX.Y_2.7/build/home
> python2.7 run_tests.py --offline
> dh_auto_test: pybuild --test -i python{version} -p 2.7 --test --system=custom
> --test-args=set -e; \
> mkdir -p {build_dir}/home; \
> mkdir -p {build_dir}/Doc; \
> cp -a Doc/Tutorial.tex {build_dir}/Doc; \
> cp -a Tests {build_dir}; \
> cd {build_dir}/Tests; \
> env DIALIGN2_DIR=/usr/share/dialign
> EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py
> --offline --dir . returned exit code 13
> make[1]: *** [override_dh_auto_test] Error 13
> debian/rules:71: recipe for target 'override_dh_auto_test' failed
The full build log is available from:
http://aws-logs.debian.net/ftbfs-logs/2015/01/17/python-biopython_1.64+dfsg-5_jessie.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
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