Your message dated Thu, 09 Oct 2014 18:04:08 +0000 with message-id <e1xci4o-0004xa...@franck.debian.org> and subject line Bug#680804: fixed in odin 1.8.8-1 has caused the Debian Bug report #680804, regarding odin: FTBFS: ld: cannot find -lg2c to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 680804: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=680804 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: odin Version: 1.8.5-2 Severity: serious Tags: jessie sid User: debian...@lists.debian.org Usertags: qa-ftbfs-20130509 qa-ftbfs Justification: FTBFS on amd64 Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part: > cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not > for C [enabled by default] > configure:8829: $? = 0 > configure:8842: result: no > configure:8862: checking for gcc option to produce PIC > configure:9134: result: -fPIC -DPIC > configure:9146: checking if gcc PIC flag -fPIC -DPIC works > configure:9164: gcc -c -g -O2 -fPIC -DPIC -DPIC conftest.c >&5 > configure:9168: $? = 0 > configure:9181: result: yes > configure:9205: checking if gcc static flag -static works > configure:9233: result: yes > configure:9248: checking if gcc supports -c -o file.o > configure:9269: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5 > configure:9273: $? = 0 > configure:9295: result: yes > configure:9303: checking if gcc supports -c -o file.o > configure:9350: result: yes > configure:9383: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) > supports shared libraries > configure:10374: result: yes > configure:10411: checking whether -lc should be explicitly linked in > configure:10416: gcc -c -g -O2 conftest.c >&5 > configure:10419: $? = 0 > configure:10434: gcc -shared conftest.o -v -Wl,-soname -Wl,conftest -o > conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1 > configure:10437: $? = 0 > configure:10449: result: no > configure:10613: checking dynamic linker characteristics > configure:11046: gcc -o conftest -g -O2 -Wl,-rpath -Wl,/foo conftest.c >&5 > configure:11046: $? = 0 > configure:11276: result: GNU/Linux ld.so > configure:11378: checking how to hardcode library paths into programs > configure:11403: result: immediate > configure:11923: checking whether stripping libraries is possible > configure:11928: result: yes > configure:11963: checking if libtool supports shared libraries > configure:11965: result: yes > configure:11968: checking whether to build shared libraries > configure:11989: result: yes > configure:11992: checking whether to build static libraries > configure:11996: result: yes > configure:12146: checking for ld used by g++ > configure:12213: result: /usr/bin/ld -m elf_x86_64 > configure:12220: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld > configure:12235: result: yes > configure:12290: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) > supports shared libraries > configure:13203: result: yes > configure:13231: g++ -c -O3 -fno-tree-vectorize conftest.cpp >&5 > configure:13234: $? = 0 > configure:13416: checking for g++ option to produce PIC > configure:13733: result: -fPIC -DPIC > configure:13742: checking if g++ PIC flag -fPIC -DPIC works > configure:13760: g++ -c -O3 -fno-tree-vectorize -fPIC -DPIC -DPIC > conftest.cpp >&5 > configure:13764: $? = 0 > configure:13777: result: yes > configure:13798: checking if g++ static flag -static works > configure:13826: result: yes > configure:13838: checking if g++ supports -c -o file.o > configure:13859: g++ -c -O3 -fno-tree-vectorize -o out/conftest2.o > conftest.cpp >&5 > configure:13863: $? = 0 > configure:13885: result: yes > configure:13890: checking if g++ supports -c -o file.o > configure:13937: result: yes > configure:13967: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) > supports shared libraries > configure:13996: result: yes > configure:14133: checking dynamic linker characteristics > configure:14514: g++ -o conftest -O3 -fno-tree-vectorize -Wl,-rpath > -Wl,/foo conftest.cpp >&5 > configure:14514: $? = 0 > configure:14744: result: GNU/Linux ld.so > configure:14795: checking how to hardcode library paths into programs > configure:14820: result: immediate > configure:14906: checking for sin in -lm > configure:14931: g++ -o conftest -I/usr/include/vtk-5.4 > -I/usr/include/vtk-5.6 -I/usr/include/vtk-5.8 -O3 -fno-tree-vectorize > -I/usr/include/vtk-5.4 -I/usr/include/vtk-5.6 -I/usr/include/vtk-5.8 > -lvtkGraphics -lvtkFiltering -lQtGui -lQtCore -lofstd -loflog -lpthread -lz > conftest.cpp -lm >&5 > configure:14931: $? = 0 > configure:14940: result: yes > configure:14948: checking for dlopen in -ldl > configure:14973: g++ -o conftest -I/usr/include/vtk-5.4 > -I/usr/include/vtk-5.6 -I/usr/include/vtk-5.8 -O3 -fno-tree-vectorize > -I/usr/include/vtk-5.4 -I/usr/include/vtk-5.6 -I/usr/include/vtk-5.8 > -lvtkGraphics -lvtkFiltering -lQtGui -lQtCore -lofstd -loflog -lpthread -lz > conftest.cpp -ldl -lm >&5 > configure:14973: $? = 0 > configure:14982: result: yes > configure:14991: checking for dlfcn.h > configure:14991: result: yes > configure:15001: checking for pthread_create in -lpthread > configure:15026: g++ -o conftest -I/usr/include/vtk-5.4 > -I/usr/include/vtk-5.6 -I/usr/include/vtk-5.8 -O3 -fno-tree-vectorize > -I/usr/include/vtk-5.4 -I/usr/include/vtk-5.6 -I/usr/include/vtk-5.8 > -lvtkGraphics -lvtkFiltering -lQtGui -lQtCore -lofstd -loflog -lpthread -lz > conftest.cpp -lpthread -ldl -lm >&5 > configure:15026: $? = 0 > configure:15035: result: yes > configure:15043: checking pthread.h usability > configure:15043: g++ -c -I/usr/include/vtk-5.4 -I/usr/include/vtk-5.6 > -I/usr/include/vtk-5.8 -O3 -fno-tree-vectorize -I/usr/include/vtk-5.4 > -I/usr/include/vtk-5.6 -I/usr/include/vtk-5.8 conftest.cpp >&5 > configure:15043: $? = 0 > configure:15043: result: yes > configure:15043: checking pthread.h presence > configure:15043: g++ -E -I/usr/include/vtk-5.4 -I/usr/include/vtk-5.6 > -I/usr/include/vtk-5.8 conftest.cpp > configure:15043: $? = 0 > configure:15043: result: yes > configure:15043: checking for pthread.h > configure:15043: result: yes > configure:15054: checking for main in -lz > configure:15073: g++ -o conftest -I/usr/include/vtk-5.4 > -I/usr/include/vtk-5.6 -I/usr/include/vtk-5.8 -O3 -fno-tree-vectorize > -I/usr/include/vtk-5.4 -I/usr/include/vtk-5.6 -I/usr/include/vtk-5.8 > -lvtkGraphics -lvtkFiltering -lQtGui -lQtCore -lofstd -loflog -lpthread -lz > conftest.cpp -lz -lpthread -ldl -lm >&5 > configure:15073: $? = 0 > configure:15082: result: yes > configure:15090: checking zlib.h usability > configure:15090: g++ -c -I/usr/include/vtk-5.4 -I/usr/include/vtk-5.6 > -I/usr/include/vtk-5.8 -O3 -fno-tree-vectorize -I/usr/include/vtk-5.4 > -I/usr/include/vtk-5.6 -I/usr/include/vtk-5.8 conftest.cpp >&5 > configure:15090: $? = 0 > configure:15090: result: yes > configure:15090: checking zlib.h presence > configure:15090: g++ -E -I/usr/include/vtk-5.4 -I/usr/include/vtk-5.6 > -I/usr/include/vtk-5.8 conftest.cpp > configure:15090: $? = 0 > configure:15090: result: yes > configure:15090: checking for zlib.h > configure:15090: result: yes > configure:15100: checking for main in -lgslcblas > configure:15119: g++ -o conftest -I/usr/include/vtk-5.4 > -I/usr/include/vtk-5.6 -I/usr/include/vtk-5.8 -O3 -fno-tree-vectorize > -I/usr/include/vtk-5.4 -I/usr/include/vtk-5.6 -I/usr/include/vtk-5.8 > -lvtkGraphics -lvtkFiltering -lQtGui -lQtCore -lofstd -loflog -lpthread -lz > conftest.cpp -lgslcblas -lz -lpthread -ldl -lm >&5 > configure:15119: $? = 0 > configure:15128: result: yes > configure:15134: checking for gsl_multifit_fdfsolver_iterate in -lgsl > configure:15159: g++ -o conftest -I/usr/include/vtk-5.4 > -I/usr/include/vtk-5.6 -I/usr/include/vtk-5.8 -O3 -fno-tree-vectorize > -I/usr/include/vtk-5.4 -I/usr/include/vtk-5.6 -I/usr/include/vtk-5.8 > -lvtkGraphics -lvtkFiltering -lQtGui -lQtCore -lofstd -loflog -lpthread -lz > conftest.cpp -lgsl -lgslcblas -lz -lpthread -ldl -lm >&5 > configure:15159: $? = 0 > configure:15168: result: yes > configure:15176: checking gsl/gsl_multifit_nlin.h usability > configure:15176: g++ -c -I/usr/include/vtk-5.4 -I/usr/include/vtk-5.6 > -I/usr/include/vtk-5.8 -O3 -fno-tree-vectorize -I/usr/include/vtk-5.4 > -I/usr/include/vtk-5.6 -I/usr/include/vtk-5.8 conftest.cpp >&5 > configure:15176: $? = 0 > configure:15176: result: yes > configure:15176: checking gsl/gsl_multifit_nlin.h presence > configure:15176: g++ -E -I/usr/include/vtk-5.4 -I/usr/include/vtk-5.6 > -I/usr/include/vtk-5.8 conftest.cpp > configure:15176: $? = 0 > configure:15176: result: yes > configure:15176: checking for gsl/gsl_multifit_nlin.h > configure:15176: result: yes > configure:15197: checking for i_indx in -lg2c > configure:15222: g++ -o conftest -I/usr/include/vtk-5.4 > -I/usr/include/vtk-5.6 -I/usr/include/vtk-5.8 -O3 -fno-tree-vectorize > -I/usr/include/vtk-5.4 -I/usr/include/vtk-5.6 -I/usr/include/vtk-5.8 > -lvtkGraphics -lvtkFiltering -lQtGui -lQtCore -lofstd -loflog -lpthread -lz > conftest.cpp -lg2c -lgslcblas -lz -lpthread -ldl -lm >&5 > /usr/bin/ld: cannot find -lg2c > collect2: error: ld returned 1 exit status The full build log is available from: http://people.debian.org/~lucas/logs/2013/05/09/odin_1.8.5-2_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
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--- Begin Message ---Source: odin Source-Version: 1.8.8-1 We believe that the bug you reported is fixed in the latest version of odin, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 680...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Michael Hanke <m...@debian.org> (supplier of updated odin package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Format: 1.8 Date: Thu, 09 Oct 2014 09:30:26 +0200 Source: odin Binary: odin mitools libodin-dev Architecture: source amd64 Version: 1.8.8-1 Distribution: unstable Urgency: medium Maintainer: NeuroDebian Team <t...@neuro.debian.net> Changed-By: Michael Hanke <m...@debian.org> Description: libodin-dev - static libraries and header for ODIN sequences mitools - view, convert and perform basic maths with medical image datasets odin - develop, simulate and run magnetic resonance sequences Closes: 680804 Changes: odin (1.8.8-1) unstable; urgency=medium . * New upstream release. - Supports blitz 0.10 (Closes: #680804). * Removed all patches -- merged upstream or obsolete. * Build using the default Debian build flags, hence enabled hardening. * Bumped Standards-version to 3.9.5, no changes necessary. Checksums-Sha1: f154e74b8d6a667cfaad1d295cfb3ea2d6ea06dc 2167 odin_1.8.8-1.dsc 5f11a24d2a945128940f56fe79076c4ca0b68a2b 1959423 odin_1.8.8.orig.tar.gz 8d25938723e0ecdf3c52e21265f6e78c53d8c80a 6464 odin_1.8.8-1.debian.tar.xz 7f6e5f43a2531042cede7df958ea4008c9802443 1285098 odin_1.8.8-1_amd64.deb 0166a3c38607fc678c72cdb009c64506f2f7fae1 2033704 mitools_1.8.8-1_amd64.deb 7b1afbb5e8823389e69b82d6c06e506a90cacc0b 2637608 libodin-dev_1.8.8-1_amd64.deb Checksums-Sha256: 6a6c5d265786886b0904c9fab1c9837f6293fa11f03b5d0162a37b399a43df6b 2167 odin_1.8.8-1.dsc d457cf03756dcb664e76b195ff536f8743321e7d66f23162a5893faf55065b8d 1959423 odin_1.8.8.orig.tar.gz 6310c1a30ff3b6ccea20e3de84a4f402d33fc236833bc8e3cc3839bcbf82b386 6464 odin_1.8.8-1.debian.tar.xz 002a0c1786c5269fca4b79f6ca1f8e1cada48d46a867cd9dff8ae8fc92d0a137 1285098 odin_1.8.8-1_amd64.deb 91fee0a0f3f141e3329f130b648178625e1386f733eafd93d257a7f345045bce 2033704 mitools_1.8.8-1_amd64.deb 2654df429a77dd928e8b02f95630d61d4c90fe2a749749b5e8e4d64e42b22c8b 2637608 libodin-dev_1.8.8-1_amd64.deb Files: ec3ec0ccea9d7a201186e0ba1089ce7b 2167 science extra odin_1.8.8-1.dsc 4f5a95b048c8e3c85df0b85e20c828ad 1959423 science extra odin_1.8.8.orig.tar.gz f79b683aefbbe51fc1a5ebf6ded05414 6464 science extra odin_1.8.8-1.debian.tar.xz 9b9bf32c866d92423d44755918583921 1285098 science extra odin_1.8.8-1_amd64.deb 6a30d6e8e3c263480e983cb10b1da46e 2033704 science extra mitools_1.8.8-1_amd64.deb 028a58c298e0e6fc07868119d182ea5c 2637608 libdevel extra libodin-dev_1.8.8-1_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBAgAGBQJUNsl3AAoJEMBz0ih/+56bfwQP/RQS7C14d8x6hORn52cgA3DT As7X4AMR/gAemDjEdInuTphX/GLnJeykwN1Bh2sBdGbXaz8Ehrb+hDmJw7PDFBku MfSJ9XBq9klfgrsfMXKkjQFUy9KpGVET1Q0gIF73tmdPWlvpz1cjhdK6NKv/g+Ui vlBUkynpYVAEAIKCsHl5ZLKOd8hLphb/UdEvZhcqQ7DNspswVP5qarvUv9QM0MLp O/c+aJG8NvAl7N3b5iCoMN0HpOeO2MOybXVJvDQSq6V9kCU551khsH/L+SDoOiTJ W3Vhy43ACDyDGBnfglURaCArot+rniovhdZteKxK/TdAg/SIsuo0pCBBsYTPiJlo L+e3gomX/UgRRXhLi7ORLA/NvUQb1AkinfZJZa6FHynsOMv15v5bPyslowi6ypTt MkWZc4evl5+SbF9DsYJupF4L3qmvbAIcvK8hf8vxrv1TNpXS5/Ic5M9lbq/+/aeN F3ZP7qTNjyGxDJm3Kc3QBSX9j8ZBbq9xWXcW2N11lfhAU+n6hyV3ePXPhjwvQT8x xPCQLoNLVcqcEN9MQMwsTG7P7TS1Wus+Yx7/zwx+xkNc2jvvsd/+9cbVPSVBIwrZ LxF4WOf3gJw/jnf83MOWRydL+Um3PMzTAePRAl0MVefcSrz0WFnemjCsKT0shbRF 2aYT/0KBvy137wfvmt3q =IcDl -----END PGP SIGNATURE-----
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