Your message dated Tue, 02 Sep 2014 09:05:50 +0000
with message-id <e1xok2a-0002lp...@franck.debian.org>
and subject line Bug#751277: fixed in python-biopython 1.64+dfsg-4
has caused the Debian Bug report #751277,
regarding python-biopython: FTBFS on mips* powerpc s390x
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
751277: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=751277
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: python-biopython
Version: 1.64+dfsg-1
Severity: serious
Justification: fails to build from source (but built successfully in the past)
All four archs fail with a similar error:
E: pybuild pybuild:256: test: plugin custom failed with: exit code=1: mkdir -p
/«BUILDDIR»/python-biopython-1.64+dfsg/.pybuild/pythonX.Y_2.7/build/Doc; \
cp -a Doc/Tutorial.tex
/«BUILDDIR»/python-biopython-1.64+dfsg/.pybuild/pythonX.Y_2.7/build/Doc; \
cp -a Tests
/«BUILDDIR»/python-biopython-1.64+dfsg/.pybuild/pythonX.Y_2.7/build; \
cd
/«BUILDDIR»/python-biopython-1.64+dfsg/.pybuild/pythonX.Y_2.7/build/Tests; \
env DIALIGN2_DIR=/usr/share/dialign
EMBOSS_ROOT=/usr/lib/emboss HOME=/tmp python2.7 run_tests.py --offline
dh_auto_test: pybuild --test -i python{version} -p 2.7 --test --system=custom
--test-args=mkdir -p {build_dir}/Doc; \
cp -a Doc/Tutorial.tex {build_dir}/Doc; \
cp -a Tests {build_dir}; \
cd {build_dir}/Tests; \
env DIALIGN2_DIR=/usr/share/dialign
EMBOSS_ROOT=/usr/lib/emboss HOME=/tmp {interpreter} run_tests.py --offline
--dir . returned exit code 13
make[1]: *** [override_dh_auto_test] Error 13
debian/rules:56: recipe for target 'override_dh_auto_test' failed
make[1]: Leaving directory '/«BUILDDIR»/python-biopython-1.64+dfsg'
make: *** [build-arch] Error 2
debian/rules:48: recipe for target 'build-arch' failed
--- End Message ---
--- Begin Message ---
Source: python-biopython
Source-Version: 1.64+dfsg-4
We believe that the bug you reported is fixed in the latest version of
python-biopython, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 751...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated python-biopython package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 01 Sep 2014 15:59:30 +0200
Source: python-biopython
Binary: python-biopython python3-biopython python-biopython-doc
python-biopython-sql python3-biopython-sql
Architecture: source amd64 all
Version: 1.64+dfsg-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
python-biopython - Python library for bioinformatics (implemented in Python 2)
python-biopython-doc - Documentation for the Biopython library
python-biopython-sql - Biopython support for the BioSQL database schema
(Python 2)
python3-biopython - Python library for bioinformatics (implemented in Python 3)
python3-biopython-sql - Biopython support for the BioSQL database schema
(Python 3)
Closes: 743927 751277
Changes:
python-biopython (1.64+dfsg-4) unstable; urgency=medium
.
* debian/patches/fix_test_problem_on_powerpc.patch: Patch provided by
upstream to run test suite on PowerPC (thanks to Michiel de Hoon
<mjldeh...@yahoo.com>)
Closes: #751277
* Install egg metadata
Closes: #743927
* Add samtools to Build-Depends + Recommends since it is checked in test
suite
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python-biopython_1.64+dfsg-4.dsc
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--- End Message ---
