Your message dated Thu, 31 Jul 2014 18:24:55 +0200 with message-id <20140731162455.GB29619@licorne> and subject line new package fixes reported bug FTBFS: Latex errors has caused the Debian Bug report #753216, regarding openms: FTBFS: Latex errors to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 753216: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=753216 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: openms Version: 1.11.1-3 Severity: serious Tags: jessie sid User: debian...@lists.debian.org Usertags: qa-ftbfs-20140628 qa-ftbfs Justification: FTBFS on amd64 Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[4]: Entering directory '/«PKGBUILDDIR»/debian/build' > /usr/bin/cmake -E cmake_progress_report > /«PKGBUILDDIR»/debian/build/CMakeFiles > Build the OpenMS/TOPP pdf tutorial > /usr/bin/cmake -E echo "" > > /usr/bin/cmake -E echo > "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~" > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /usr/bin/cmake -E echo "Creating OpenMS pdf tutorial" > Creating OpenMS pdf tutorial > /usr/bin/cmake -E echo "" > > /usr/bin/cmake -E remove_directory doc/OpenMS_tutorial/latex_output > /usr/bin/cmake -E chdir doc/OpenMS_tutorial/ doxygen Doxyfile > Warning: Tag `DETAILS_AT_TOP' at line 43 of file `Doxyfile' has become > obsolete. > To avoid this warning please remove this line from your > configuration file or upgrade it using "doxygen -u" > Warning: Tag `SHOW_DIRECTORIES' at line 80 of file `Doxyfile' has become > obsolete. > To avoid this warning please remove this line from your > configuration file or upgrade it using "doxygen -u" > Warning: Tag `HTML_ALIGN_MEMBERS' at line 132 of file `Doxyfile' has become > obsolete. > To avoid this warning please remove this line from your > configuration file or upgrade it using "doxygen -u" > Warning: Tag `XML_SCHEMA' at line 179 of file `Doxyfile' has become obsolete. > To avoid this warning please remove this line from your > configuration file or upgrade it using "doxygen -u" > Warning: Tag `XML_DTD' at line 180 of file `Doxyfile' has become obsolete. > To avoid this warning please remove this line from your > configuration file or upgrade it using "doxygen -u" > /usr/bin/cmake -E copy doc/OpenMS_tutorial/refman_overwrite.tex > doc/OpenMS_tutorial/latex_output/refman.tex > /usr/bin/cmake -E chdir doc/OpenMS_tutorial/latex_output/ pdflatex refman.tex > This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014/Debian) > (preloaded format=pdflatex) > restricted \write18 enabled. > entering extended mode > (./refman.tex > LaTeX2e <2014/05/01> > Babel <3.9k> and hyphenation patterns for 2 languages loaded. > (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls > Document Class: article 2007/10/19 v1.4h Standard LaTeX document class > (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) > (/usr/share/texlive/texmf-dist/tex/latex/a4wide/a4wide.sty > (/usr/share/texlive/texmf-dist/tex/latex/ntgclass/a4.sty)) > (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) > (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) > (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty > (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) > (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty > (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) > (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/graphics.cfg) > (/usr/share/texlive/texmf-dist/tex/latex/pdftex-def/pdftex.def > (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) > (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)))) > (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) > (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) > (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty > (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def)) > (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) > (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) > (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty > (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty > (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) > (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) > (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) > (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) > (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) > (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) > (/usr/share/texlive/texmf-dist/tex/latex/hyperref/backref.sty > (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) > (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) > > Package hyperref Message: Driver: hpdftex. > > (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def) (./doxygen.sty > (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty) > (/usr/share/texlive/texmf-dist/tex/latex/tools/calc.sty) > (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) > (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) > (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty > (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/color.cfg) > (/usr/share/texlive/texmf-dist/tex/latex/colortbl/colortbl.sty)) > (/usr/share/texlive/texmf-dist/tex/latex/xtab/xtab.sty)) > Writing index file refman.idx > No file refman.aux. > (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) > (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) > (/usr/share/texlive/texmf-dist/tex/context/base/supp-pdf.mkii > [Loading MPS to PDF converter (version 2006.09.02).] > ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty > (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) > (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) > (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty > (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) > [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]pdfTeX warning (ext4): > de > stination with the same identifier (name{page.1}) has been already used, > duplic > ate ignored > <to be read again> > \relax > l.43 > [1] (./tutorial_general.tex > ! Undefined control sequence. > l.1 ...utorial gives an introduction to the Open\+ > M\+S core datastructures > a... > > ? > ! Emergency stop. > l.1 ...utorial gives an introduction to the Open\+ > M\+S core datastructures > a... > > ! ==> Fatal error occurred, no output PDF file produced! > Transcript written on refman.log. > make[4]: *** [CMakeFiles/doc_tutorials] Error 1 The full build log is available from: http://aws-logs.debian.net/ftbfs-logs/2014/06/28/openms_1.11.1-3_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
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--- Begin Message ---Greetings, I think that the last version of the package (1.11.1-4) implements a patch that fixes the bug that was reported. Feel free to reopen it if I am wrong. Cheers, Filippo -- Filippo Rusconi, PhD - public crypto key 7694CF42@ pgp.mit.edu Researcher at CNRS and Debian Developer <lopi...@debian.org> Author of ``massXpert'' at http://www.massxpert.org
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