Your message dated Thu, 24 Jul 2014 11:51:03 +0200
with message-id <20140724095103.ga19...@an3as.eu>
and subject line Bug closed with latest upload
has caused the Debian Bug report #755335,
regarding r-bioc-genomicfeatures: FTBFS: in 'GenomicFeatures' methods for
export not found: findSpliceOverlaps
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
755335: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=755335
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: r-bioc-genomicfeatures
Version: 1.14.2-1
Severity: serious
Tags: jessie sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20140718 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part (hopefully):
> fakeroot debian/rules binary
> test -x debian/rules
> dh_testroot
> dh_prep
> dh_installdirs -A
> mkdir -p "."
> dh_installdirs usr/lib/R/site-library
> echo "R:Depends=r-base-core (>= 3.1.1-1)" >>
> debian/r-bioc-genomicfeatures.substvars
> if test -f /usr/bin/xvfb-run; then \
> xvfb-run -a \
> R CMD INSTALL -l
> /«PKGBUILDDIR»/debian/r-bioc-genomicfeatures/usr/lib/R/site-library --clean
> \
> . ; \
> else \
> R CMD INSTALL -l
> /«PKGBUILDDIR»/debian/r-bioc-genomicfeatures/usr/lib/R/site-library \
> --clean . ;\
> fi
> * installing *source* package 'GenomicFeatures' ...
> ** R
> ** inst
> ** preparing package for lazy loading
> code for methods in class "TranscriptDb" was not checked for suspicious field
> assignments (recommended package 'codetools' not available?)
> ** help
> *** installing help indices
> ** building package indices
> ** testing if installed package can be loaded
> Warning: no function found corresponding to methods exports from
> 'GenomicFeatures' for: 'findSpliceOverlaps'
> Error in loadNamespace(package, c(which.lib.loc, lib.loc)) :
> in 'GenomicFeatures' methods for export not found: findSpliceOverlaps
> Error: loading failed
> Execution halted
> ERROR: loading failed
> * removing
> '/«PKGBUILDDIR»/debian/r-bioc-genomicfeatures/usr/lib/R/site-library/GenomicFeatures'
> make: *** [R_any_arch] Error 1
The full build log is available from:
http://aws-logs.debian.net/ftbfs-logs/2014/07/18/r-bioc-genomicfeatures_1.14.2-1_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
The latest upload is closing this bug but it was forgotten to mention in
d/changelog.
--
http://fam-tille.de
--- End Message ---
