Bug#733352: [Debian-med-packaging] Bug#733352: Bowtie and tophat fail to build with seqan >= 1.4

[Alex Mestiashvili]

Patch provided by Manuel Holtgrewe solves the build issues with 
seqan-1.4 and tophat.

https://lists.fu-berlin.de/pipermail/seqan-dev/2014-July/msg00001.html
Alex


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