Your message dated Mon, 12 May 2014 07:49:38 +0000
with message-id <e1wjkzs-00022o...@franck.debian.org>
and subject line Bug#747781: fixed in biojava3-live 3.0.7+dfsg-2
has caused the Debian Bug report #747781,
regarding biojava3-live: FTBFS: error: package org.json.simple does not exist
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
747781: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=747781
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: biojava3-live
Version: 3.0.7+dfsg-1
Severity: serious
Tags: jessie sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20140510 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part (hopefully):
> make[1]: Entering directory '/«BUILDDIR»/biojava3-live-3.0.7+dfsg'
> cd biojava3-forester && ant jar
> Buildfile: /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-forester/build.xml
> 
> compile:
>     [mkdir] Created dir: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-forester/classes
>     [mkdir] Created dir: /«BUILDDIR»/biojava3-live-3.0.7+dfsg/dist
>     [javac] 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-forester/build.xml:72: warning: 
> 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set 
> to false for repeatable builds
>     [javac] Compiling 332 source files to 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-forester/classes
>     [javac] Note: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-forester/src/main/java/org/forester/archaeopteryx/PdfExporter.java
>  uses or overrides a deprecated API.
>     [javac] Note: Recompile with -Xlint:deprecation for details.
>     [javac] Note: Some input files use unchecked or unsafe operations.
>     [javac] Note: Recompile with -Xlint:unchecked for details.
>      [copy] Warning: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-forester/src/main/resources 
> does not exist.
> 
> jar:
>       [jar] Building jar: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/dist/biojava3-forester.jar
> 
> BUILD SUCCESSFUL
> Total time: 13 seconds
> cd biojava3-core && ant jar
> Buildfile: /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-core/build.xml
> 
> compile:
>     [mkdir] Created dir: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-core/classes
>     [javac] /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-core/build.xml:72: 
> warning: 'includeantruntime' was not set, defaulting to 
> build.sysclasspath=last; set to false for repeatable builds
>     [javac] Compiling 134 source files to 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-core/classes
>     [javac] Note: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-core/src/main/java/org/biojava3/core/sequence/ProteinSequence.java
>  uses unchecked or unsafe operations.
>     [javac] Note: Recompile with -Xlint:unchecked for details.
>      [copy] Copying 1 file to 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-core/classes
> 
> jar:
>       [jar] Building jar: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/dist/biojava3-core.jar
> 
> BUILD SUCCESSFUL
> Total time: 6 seconds
> cd biojava3-phylo && ant jar
> Buildfile: /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-phylo/build.xml
> 
> compile:
>     [mkdir] Created dir: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-phylo/classes
>     [javac] /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-phylo/build.xml:72: 
> warning: 'includeantruntime' was not set, defaulting to 
> build.sysclasspath=last; set to false for repeatable builds
>     [javac] Compiling 10 source files to 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-phylo/classes
>     [javac] Note: Some input files use unchecked or unsafe operations.
>     [javac] Note: Recompile with -Xlint:unchecked for details.
>      [copy] Copying 1 file to 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-phylo/classes
> 
> jar:
>       [jar] Building jar: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/dist/biojava3-phylo.jar
> 
> BUILD SUCCESSFUL
> Total time: 3 seconds
> cd biojava3-alignment && ant jar
> Buildfile: /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-alignment/build.xml
> 
> compile:
>     [mkdir] Created dir: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-alignment/classes
>     [javac] 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-alignment/build.xml:72: 
> warning: 'includeantruntime' was not set, defaulting to 
> build.sysclasspath=last; set to false for repeatable builds
>     [javac] Compiling 65 source files to 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-alignment/classes
>      [copy] Copying 20 files to 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-alignment/classes
> 
> jar:
>       [jar] Building jar: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/dist/biojava3-alignment.jar
> 
> BUILD SUCCESSFUL
> Total time: 5 seconds
> cd biojava3-aa-prop && ant jar
> Buildfile: /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-aa-prop/build.xml
> 
> compile:
>     [mkdir] Created dir: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-aa-prop/classes
>     [javac] 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-aa-prop/build.xml:72: warning: 
> 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set 
> to false for repeatable builds
>     [javac] Compiling 31 source files to 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-aa-prop/classes
>     [javac] Creating empty 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-aa-prop/classes/org/biojava3/aaproperties/xml/package-info.class
>     [javac] Creating empty 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-aa-prop/classes/org/biojava3/aaproperties/profeat/convertor/package-info.class
>     [javac] Creating empty 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-aa-prop/classes/org/biojava3/aaproperties/package-info.class
>     [javac] Creating empty 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-aa-prop/classes/org/biojava3/aaproperties/profeat/package-info.class
>      [copy] Copying 10 files to 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-aa-prop/classes
> 
> jar:
>       [jar] Building jar: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/dist/biojava3-aa-prop.jar
> 
> BUILD SUCCESSFUL
> Total time: 3 seconds
> cd biojava3-genome && ant jar
> Buildfile: /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-genome/build.xml
> 
> compile:
>     [mkdir] Created dir: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-genome/classes
>     [javac] 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-genome/build.xml:72: warning: 
> 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set 
> to false for repeatable builds
>     [javac] Compiling 20 source files to 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-genome/classes
>     [javac] Note: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-genome/src/main/java/org/biojava3/genome/parsers/gff/GFF3Writer.java
>  uses unchecked or unsafe operations.
>     [javac] Note: Recompile with -Xlint:unchecked for details.
>      [copy] Warning: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-genome/src/main/resources does 
> not exist.
> 
> jar:
>       [jar] Building jar: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/dist/biojava3-genome.jar
> 
> BUILD SUCCESSFUL
> Total time: 4 seconds
> cd biojava3-sequencing && ant jar
> Buildfile: /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-sequencing/build.xml
> 
> compile:
>     [mkdir] Created dir: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-sequencing/classes
>     [javac] 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-sequencing/build.xml:72: 
> warning: 'includeantruntime' was not set, defaulting to 
> build.sysclasspath=last; set to false for repeatable builds
>     [javac] Compiling 19 source files to 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-sequencing/classes
>     [javac] Note: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-sequencing/src/main/java/org/biojava3/sequencing/io/fastq/FastqTools.java
>  uses unchecked or unsafe operations.
>     [javac] Note: Recompile with -Xlint:unchecked for details.
>     [javac] Creating empty 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-sequencing/classes/org/biojava3/sequencing/io/fastq/package-info.class
>      [copy] Warning: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-sequencing/src/main/resources 
> does not exist.
> 
> jar:
>       [jar] Building jar: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/dist/biojava3-sequencing.jar
> 
> BUILD SUCCESSFUL
> Total time: 3 seconds
> cd biojava3-structure && ant jar
> Buildfile: /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-structure/build.xml
> 
> compile:
>     [mkdir] Created dir: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-structure/classes
>     [javac] 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-structure/build.xml:72: 
> warning: 'includeantruntime' was not set, defaulting to 
> build.sysclasspath=last; set to false for repeatable builds
>     [javac] Compiling 314 source files to 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-structure/classes
>     [javac] Note: Some input files use or override a deprecated API.
>     [javac] Note: Recompile with -Xlint:deprecation for details.
>     [javac] Note: Some input files use unchecked or unsafe operations.
>     [javac] Note: Recompile with -Xlint:unchecked for details.
>      [copy] Copying 63 files to 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-structure/classes
> 
> jar:
>       [jar] Building jar: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/dist/biojava3-structure.jar
> 
> BUILD SUCCESSFUL
> Total time: 11 seconds
> cd biojava3-structure-gui && ant jar
> Buildfile: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-structure-gui/build.xml
> 
> compile:
>     [mkdir] Created dir: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-structure-gui/classes
>     [javac] 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-structure-gui/build.xml:72: 
> warning: 'includeantruntime' was not set, defaulting to 
> build.sysclasspath=last; set to false for repeatable builds
>     [javac] Compiling 105 source files to 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-structure-gui/classes
>     [javac] Note: Some input files use unchecked or unsafe operations.
>     [javac] Note: Recompile with -Xlint:unchecked for details.
>      [copy] Copying 14 files to 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-structure-gui/classes
> 
> jar:
>       [jar] Building jar: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/dist/biojava3-structure-gui.jar
> 
> BUILD SUCCESSFUL
> Total time: 8 seconds
> cd biojava3-modfinder && ant jar
> Buildfile: /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-modfinder/build.xml
> 
> compile:
>     [mkdir] Created dir: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-modfinder/classes
>     [javac] 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-modfinder/build.xml:72: 
> warning: 'includeantruntime' was not set, defaulting to 
> build.sysclasspath=last; set to false for repeatable builds
>     [javac] Compiling 21 source files to 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-modfinder/classes
>      [copy] Copying 1 file to 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-modfinder/classes
> 
> jar:
>       [jar] Building jar: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/dist/biojava3-modfinder.jar
> 
> BUILD SUCCESSFUL
> Total time: 4 seconds
> cd biojava3-protein-disorder && ant jar
> Buildfile: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-protein-disorder/build.xml
> 
> compile:
>     [mkdir] Created dir: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-protein-disorder/classes
>     [javac] 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-protein-disorder/build.xml:72: 
> warning: 'includeantruntime' was not set, defaulting to 
> build.sysclasspath=last; set to false for repeatable builds
>     [javac] Compiling 13 source files to 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-protein-disorder/classes
>     [javac] Creating empty 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-protein-disorder/classes/org/biojava3/data/sequence/package-info.class
>     [javac] Creating empty 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-protein-disorder/classes/org/biojava3/ronn/package-info.class
>      [copy] Copying 10 files to 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-protein-disorder/classes
> 
> jar:
>       [jar] Building jar: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/dist/biojava3-protein-disorder.jar
> 
> BUILD SUCCESSFUL
> Total time: 3 seconds
> cd biojava3-ws && ant jar
> Buildfile: /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-ws/build.xml
> 
> compile:
>     [mkdir] Created dir: 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-ws/classes
>     [javac] /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-ws/build.xml:72: 
> warning: 'includeantruntime' was not set, defaulting to 
> build.sysclasspath=last; set to false for repeatable builds
>     [javac] Compiling 20 source files to 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/build/biojava3-ws/classes
>     [javac] 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-ws/src/main/java/org/biojava3/ws/hmmer/RemoteHmmerScan.java:16:
>  error: package org.json.simple does not exist
>     [javac] import org.json.simple.JSONArray;
>     [javac]                       ^
>     [javac] 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-ws/src/main/java/org/biojava3/ws/hmmer/RemoteHmmerScan.java:17:
>  error: package org.json.simple does not exist
>     [javac] import org.json.simple.JSONObject;
>     [javac]                       ^
>     [javac] 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-ws/src/main/java/org/biojava3/ws/hmmer/RemoteHmmerScan.java:18:
>  error: package org.json.simple does not exist
>     [javac] import org.json.simple.JSONValue;
>     [javac]                       ^
>     [javac] 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-ws/src/main/java/org/biojava3/ws/hmmer/RemoteHmmerScan.java:106:
>  error: cannot find symbol
>     [javac]                   JSONObject json= (JSONObject) 
> JSONValue.parse(result.toString());
>     [javac]                   ^
>     [javac]   symbol:   class JSONObject
>     [javac]   location: class RemoteHmmerScan
>     [javac] 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-ws/src/main/java/org/biojava3/ws/hmmer/RemoteHmmerScan.java:106:
>  error: cannot find symbol
>     [javac]                   JSONObject json= (JSONObject) 
> JSONValue.parse(result.toString());
>     [javac]                                     ^
>     [javac]   symbol:   class JSONObject
>     [javac]   location: class RemoteHmmerScan
>     [javac] 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-ws/src/main/java/org/biojava3/ws/hmmer/RemoteHmmerScan.java:106:
>  error: cannot find symbol
>     [javac]                   JSONObject json= (JSONObject) 
> JSONValue.parse(result.toString());
>     [javac]                                                 ^
>     [javac]   symbol:   variable JSONValue
>     [javac]   location: class RemoteHmmerScan
>     [javac] 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-ws/src/main/java/org/biojava3/ws/hmmer/RemoteHmmerScan.java:107:
>  error: cannot find symbol
>     [javac]                   JSONObject hmresults = (JSONObject) 
> json.get("results");
>     [javac]                   ^
>     [javac]   symbol:   class JSONObject
>     [javac]   location: class RemoteHmmerScan
>     [javac] 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-ws/src/main/java/org/biojava3/ws/hmmer/RemoteHmmerScan.java:107:
>  error: cannot find symbol
>     [javac]                   JSONObject hmresults = (JSONObject) 
> json.get("results");
>     [javac]                                           ^
>     [javac]   symbol:   class JSONObject
>     [javac]   location: class RemoteHmmerScan
>     [javac] 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-ws/src/main/java/org/biojava3/ws/hmmer/RemoteHmmerScan.java:109:
>  error: cannot find symbol
>     [javac]                   JSONArray hits = (JSONArray) 
> hmresults.get("hits");
>     [javac]                   ^
>     [javac]   symbol:   class JSONArray
>     [javac]   location: class RemoteHmmerScan
>     [javac] 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-ws/src/main/java/org/biojava3/ws/hmmer/RemoteHmmerScan.java:109:
>  error: cannot find symbol
>     [javac]                   JSONArray hits = (JSONArray) 
> hmresults.get("hits");
>     [javac]                                     ^
>     [javac]   symbol:   class JSONArray
>     [javac]   location: class RemoteHmmerScan
>     [javac] 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-ws/src/main/java/org/biojava3/ws/hmmer/RemoteHmmerScan.java:112:
>  error: cannot find symbol
>     [javac]                           JSONObject hit = (JSONObject) 
> hits.get(i);
>     [javac]                           ^
>     [javac]   symbol:   class JSONObject
>     [javac]   location: class RemoteHmmerScan
>     [javac] 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-ws/src/main/java/org/biojava3/ws/hmmer/RemoteHmmerScan.java:112:
>  error: cannot find symbol
>     [javac]                           JSONObject hit = (JSONObject) 
> hits.get(i);
>     [javac]                                             ^
>     [javac]   symbol:   class JSONObject
>     [javac]   location: class RemoteHmmerScan
>     [javac] 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-ws/src/main/java/org/biojava3/ws/hmmer/RemoteHmmerScan.java:136:
>  error: cannot find symbol
>     [javac]                           JSONArray hmmdomains = (JSONArray) 
> hit.get("domains");
>     [javac]                           ^
>     [javac]   symbol:   class JSONArray
>     [javac]   location: class RemoteHmmerScan
>     [javac] 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-ws/src/main/java/org/biojava3/ws/hmmer/RemoteHmmerScan.java:136:
>  error: cannot find symbol
>     [javac]                           JSONArray hmmdomains = (JSONArray) 
> hit.get("domains");
>     [javac]                                                   ^
>     [javac]   symbol:   class JSONArray
>     [javac]   location: class RemoteHmmerScan
>     [javac] 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-ws/src/main/java/org/biojava3/ws/hmmer/RemoteHmmerScan.java:140:
>  error: cannot find symbol
>     [javac]                                   JSONObject d = (JSONObject) 
> hmmdomains.get(j);
>     [javac]                                   ^
>     [javac]   symbol:   class JSONObject
>     [javac]   location: class RemoteHmmerScan
>     [javac] 
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-ws/src/main/java/org/biojava3/ws/hmmer/RemoteHmmerScan.java:140:
>  error: cannot find symbol
>     [javac]                                   JSONObject d = (JSONObject) 
> hmmdomains.get(j);
>     [javac]                                                   ^
>     [javac]   symbol:   class JSONObject
>     [javac]   location: class RemoteHmmerScan
>     [javac] 16 errors
> 
> BUILD FAILED
> /«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-ws/build.xml:72: Compile 
> failed; see the compiler error output for details.
> 
> Total time: 3 seconds
> make[1]: *** [override_dh_auto_build] Error 1

The full build log is available from:
   
http://aws-logs.debian.net/ftbfs-logs/2014/05/10/biojava3-live_3.0.7+dfsg-1_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.

--- End Message ---
--- Begin Message ---
Source: biojava3-live
Source-Version: 3.0.7+dfsg-2

We believe that the bug you reported is fixed in the latest version of
biojava3-live, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 747...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Olivier Sallou <osal...@debian.org> (supplier of updated biojava3-live package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Mon, 12 May 2014 09:31:04 +0200
Source: biojava3-live
Binary: libbiojava3.0-java libbiojava3-java libbiojava3-java-doc
Architecture: source all
Version: 3.0.7+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Olivier Sallou <osal...@debian.org>
Description: 
 libbiojava3-java - Java API to biological data and applications (default 
version)
 libbiojava3-java-doc - [Biology] Documentation for BioJava
 libbiojava3.0-java - Java API to biological data and applications (version 3)
Closes: 747781
Changes: 
 biojava3-live (3.0.7+dfsg-2) unstable; urgency=medium
 .
   * d/build.xml, d/control: change deps jar file name(Closes: #747781).
Checksums-Sha1: 
 c9032df48ba611470a55502b9b3cc8dc7ba3e76b 2591 biojava3-live_3.0.7+dfsg-2.dsc
 cc232b17b8c8331737de8c7bbb4dd2b39f5d8b27 9556 
biojava3-live_3.0.7+dfsg-2.debian.tar.xz
 5c1521aeee66dcfc5e79db1519d9904be5fed0e1 3574620 
libbiojava3.0-java_3.0.7+dfsg-2_all.deb
 27059f2787ec1de137d84af8ac41d85e694fbb31 3296 
libbiojava3-java_3.0.7+dfsg-2_all.deb
 c2333514c3a8d4c3e6566301dea1cf71f4f504d6 1203270 
libbiojava3-java-doc_3.0.7+dfsg-2_all.deb
Checksums-Sha256: 
 f1c43fe317a3e76cbec6bfd6f17d38d570a5a854478ace444ca67a716ff693f1 2591 
biojava3-live_3.0.7+dfsg-2.dsc
 a56c13d6859941ea31e13ad35c2d7140b4400ffe37706148374053b082e1a5a3 9556 
biojava3-live_3.0.7+dfsg-2.debian.tar.xz
 aca0619e93a7081048c4f4e36aaa527c9fc16ca4899318d736efde59ea2f39d9 3574620 
libbiojava3.0-java_3.0.7+dfsg-2_all.deb
 7b75116e5f4ae4350c5aab111875cf91747840c472c49d545437a2abeaa7587b 3296 
libbiojava3-java_3.0.7+dfsg-2_all.deb
 cbb4c942c6ebaae3100e4e26f4a6b74ff02398c4cd12cb06b96043108cd0d64c 1203270 
libbiojava3-java-doc_3.0.7+dfsg-2_all.deb
Files: 
 711d82103b28dd3234935de46c4eb8a6 3574620 java optional 
libbiojava3.0-java_3.0.7+dfsg-2_all.deb
 098d2ad58571c80a34cdb2b5575fa4c1 3296 java optional 
libbiojava3-java_3.0.7+dfsg-2_all.deb
 61280b723f52c614794523337e6af6be 1203270 doc optional 
libbiojava3-java-doc_3.0.7+dfsg-2_all.deb
 954dfcadfaed0cdc9a74d7e8a80fc4ce 2591 java optional 
biojava3-live_3.0.7+dfsg-2.dsc
 cabafb0bb2bae65b61aaf82158c62928 9556 java optional 
biojava3-live_3.0.7+dfsg-2.debian.tar.xz

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--- End Message ---

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