On Wed, Apr 30, 2014 at 2:30 PM, Andreas Tille <ti...@debian.org> wrote: > Hi Peter, > > thanks for your super-fast response. > > On Wed, Apr 30, 2014 at 02:24:42PM +0100, Peter Cock wrote: >> Are you specifically asking about Biopython 1.63 here? > > Yes. Since I have added python3 binary packages Biopython 1.63 went > through manual inspection by ftpmaster and this issue was noticed.
Very through of them - thanks! Also thank you for doing the Debian Python3 packaging of Biopython :) >> I think you >> can reasonable exclude this DTD file (and any others under the >> Bio/Entrez/DTD file). Biopython 1.63 will warn if they are missing >> but attempt to download them automatically. > > OK. > >> We're looking at dropping all the NCBI Entrez related DTD files, >> since the next Biopython release (v1.64) will automatically download >> AND cache them - see recent discussion, e.g. >> >> http://lists.open-bio.org/pipermail/biopython-dev/2014-March/011205.html > > That's fine. > >> We haven't actually removed the files on GitHub yet, but this >> might be an incentive to do so. > > OK, meanwhile (as long as 1.64 is not yet released) I will remove the > file from the Debian archive. > > Thanks for the clarification > > Andreas. Great, Peter P.S. I'm skimming over the Debian patches to see what we can fix: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/python-biopython/trunk/debian/patches/ e.g. https://github.com/biopython/biopython/commit/2f098ac5311e0eec3d6737f4fff60e18c50b9481 -- To UNSUBSCRIBE, email to debian-bugs-rc-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
