На 25.2.2014 г. 15:30 ч., Andreas Tille написа:
since we uploaded seqan 1.4.x packages to Debian the packages bowtie and
tophat failed to build while the build went fine with seqan 1.3.

Please also let us know if you have no idea how to fix this.  In this
case we would use a last fallback and reinject a versioned seqan1.3
package in addition to the latest version of seqan.

bowtie package uses seqan 1.2 and I made series of patches to build it against seqan 1.3 <http://anonscm.debian.org/viewvc/debian-med/trunk/packages/bowtie/trunk/debian/patches/>. This weekend I'll work on patching bowtie to work with 1.4.

Best regards,
Ognyan Kulev


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