Your message dated Sat, 22 Feb 2014 00:04:24 +0000
with message-id <e1wh04u-0001kg...@franck.debian.org>
and subject line Bug#739631: fixed in python-pysam 0.7.5-2
has caused the Debian Bug report #739631,
regarding python-pysam: FTBFS: ImportError: No module named pysam
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
739631: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=739631
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: python-pysam
Version: 0.7.5-1
Severity: serious
Justification: fails to build from source
Builds of python-pysam in minimal environments (as on the
autobuilders) have been failing:
dh_auto_test
chmod a+x tests/pysam_test_offline.py
set -e -x;\
for pyv in `pyversions -dv` ; do \
cd tests && env PYTHONPATH=/«PKGBUILDDIR»/build/lib.«ARCH»-${pyv}
./pysam_test_offline.py ; \
done
+ pyversions -dv
+ cd tests
+ env PYTHONPATH=/«PKGBUILDDIR»/build/lib.«ARCH»-2.7 ./pysam_test_offline.py
Traceback (most recent call last):
File "./pysam_test_offline.py", line 8, in <module>
import pysam
ImportError: No module named pysam
make[1]: *** [override_dh_auto_test] Error 1
make[1]: Leaving directory `/«PKGBUILDDIR»'
make: *** [build-arch] Error 2
Could you please take a look, and ensure that PYTHONPATH covers
pysam's Python files, not just the extensions that support them?
Thanks!
--- End Message ---
--- Begin Message ---
Source: python-pysam
Source-Version: 0.7.5-2
We believe that the bug you reported is fixed in the latest version of
python-pysam, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 739...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated python-pysam package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 20 Feb 2014 19:01:46 +0100
Source: python-pysam
Binary: python-pysam python-pysam-tests
Architecture: source amd64 all
Version: 0.7.5-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
python-pysam - interface for the SAM/BAM sequence alignment and mapping format
python-pysam-tests - interface for the SAM/BAM sequence alignment and mapping
format (
Closes: 739631
Changes:
python-pysam (0.7.5-2) unstable; urgency=medium
.
* debian/rules: Set PYTHONPATH correctly using dh_python
(thanks to Piotr Ożarowski <pi...@debian.org> for the patch)
Closes: #739631
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