Your message dated Sun, 29 Dec 2013 01:33:42 +0000 with message-id <e1vx5ga-0001jv...@franck.debian.org> and subject line Bug#733359: fixed in rdkit 201309-1 has caused the Debian Bug report #733359, regarding rdkit: FTBFS: smiles.tab.cpp:1264:30: error: too few arguments to function 'int yysmiles_lex(YYSTYPE*, void*)' to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 733359: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=733359 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: rdkit Version: 201306-2 Severity: serious Tags: jessie sid User: debian...@lists.debian.org Usertags: qa-ftbfs-20131226 qa-ftbfs Justification: FTBFS on amd64 Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' > /usr/bin/cmake -E cmake_progress_report > /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles > [ 12%] Building CXX object > Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms_static.dir/ChemTransforms.cpp.o > cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms && > /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 > -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security > -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code > -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o > CMakeFiles/ChemTransforms_static.dir/ChemTransforms.cpp.o -c > /«PKGBUILDDIR»/Code/GraphMol/ChemTransforms/ChemTransforms.cpp > /usr/bin/cmake -E cmake_progress_report > /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles > [ 12%] Building CXX object > Code/DistGeom/CMakeFiles/DistGeometry_static.dir/ChiralViolationContrib.cpp.o > cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/c++ > -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector > --param=ssp-buffer-size=4 -Wformat -Werror=format-security > -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code > -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o > CMakeFiles/DistGeometry_static.dir/ChiralViolationContrib.cpp.o -c > /«PKGBUILDDIR»/Code/DistGeom/ChiralViolationContrib.cpp > Linking CXX static library libDepictor_static.a > cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && > /usr/bin/cmake -P CMakeFiles/Depictor_static.dir/cmake_clean_target.cmake > cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && > /usr/bin/cmake -E cmake_link_script CMakeFiles/Depictor_static.dir/link.txt > --verbose=1 > /usr/bin/ar cr libDepictor_static.a > CMakeFiles/Depictor_static.dir/RDDepictor.cpp.o > CMakeFiles/Depictor_static.dir/EmbeddedFrag.cpp.o > CMakeFiles/Depictor_static.dir/DepictUtils.cpp.o > /usr/bin/ranlib libDepictor_static.a > make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' > /usr/bin/cmake -E cmake_progress_report > /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 12 > [ 12%] Built target Depictor_static > /usr/bin/cmake -E cmake_progress_report > /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 72 > [ 13%] Building CXX object > Code/GraphMol/Substruct/CMakeFiles/SubstructMatch_static.dir/SubstructUtils.cpp.o > cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Substruct && > /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 > -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security > -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code > -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o > CMakeFiles/SubstructMatch_static.dir/SubstructUtils.cpp.o -c > /«PKGBUILDDIR»/Code/GraphMol/Substruct/SubstructUtils.cpp > /usr/bin/cmake -E cmake_progress_report > /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles > [ 13%] Building CXX object > Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/DistanceConstraint.cpp.o > cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ > -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector > --param=ssp-buffer-size=4 -Wformat -Werror=format-security > -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code > -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o > CMakeFiles/ForceField_static.dir/UFF/DistanceConstraint.cpp.o -c > /«PKGBUILDDIR»/Code/ForceField/UFF/DistanceConstraint.cpp > /usr/bin/cmake -E cmake_progress_report > /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles > [ 13%] Building CXX object > Code/GraphMol/CMakeFiles/GraphMol_static.dir/Bond.cpp.o > cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ > -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector > --param=ssp-buffer-size=4 -Wformat -Werror=format-security > -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code > -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o > CMakeFiles/GraphMol_static.dir/Bond.cpp.o -c > /«PKGBUILDDIR»/Code/GraphMol/Bond.cpp > /usr/bin/cmake -E cmake_progress_report > /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles > [ 13%] Building CXX object > Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/SmilesWrite.cpp.o > cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && > /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 > -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security > -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code > -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o > CMakeFiles/SmilesParse_static.dir/SmilesWrite.cpp.o -c > /«PKGBUILDDIR»/Code/GraphMol/SmilesParse/SmilesWrite.cpp > /usr/bin/cmake -E cmake_progress_report > /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 69 > [ 14%] Building CXX object > Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/SmartsWrite.cpp.o > cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && > /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 > -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security > -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code > -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o > CMakeFiles/SmilesParse_static.dir/SmartsWrite.cpp.o -c > /«PKGBUILDDIR»/Code/GraphMol/SmilesParse/SmartsWrite.cpp > Linking CXX static library libDistGeometry_static.a > cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/cmake -P > CMakeFiles/DistGeometry_static.dir/cmake_clean_target.cmake > cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/cmake -E > cmake_link_script CMakeFiles/DistGeometry_static.dir/link.txt --verbose=1 > /usr/bin/ar cr libDistGeometry_static.a > CMakeFiles/DistGeometry_static.dir/DistGeomUtils.cpp.o > CMakeFiles/DistGeometry_static.dir/TriangleSmooth.cpp.o > CMakeFiles/DistGeometry_static.dir/DistViolationContrib.cpp.o > CMakeFiles/DistGeometry_static.dir/ChiralViolationContrib.cpp.o > /usr/bin/ranlib libDistGeometry_static.a > make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' > /usr/bin/cmake -E cmake_progress_report > /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 18 > [ 14%] Built target DistGeometry_static > /usr/bin/cmake -E cmake_progress_report > /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles > [ 14%] Building CXX object > Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/MolFileParser.cpp.o > cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && > /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 > -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security > -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code > -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o > CMakeFiles/FileParsers_static.dir/MolFileParser.cpp.o -c > /«PKGBUILDDIR»/Code/GraphMol/FileParsers/MolFileParser.cpp > /usr/bin/cmake -E cmake_progress_report > /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 32 > [ 15%] Building CXX object > Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/Params.cpp.o > cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ > -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector > --param=ssp-buffer-size=4 -Wformat -Werror=format-security > -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code > -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o > CMakeFiles/ForceField_static.dir/UFF/Params.cpp.o -c > /«PKGBUILDDIR»/Code/ForceField/UFF/Params.cpp > /usr/bin/cmake -E cmake_progress_report > /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles > [ 15%] Building CXX object > Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/MolFileStereochem.cpp.o > cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && > /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 > -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security > -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code > -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o > CMakeFiles/FileParsers_static.dir/MolFileStereochem.cpp.o -c > /«PKGBUILDDIR»/Code/GraphMol/FileParsers/MolFileStereochem.cpp > /usr/bin/cmake -E cmake_progress_report > /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles > [ 15%] Building CXX object > Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/smiles.tab.cpp.o > cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && > /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 > -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security > -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code > -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o > CMakeFiles/SmilesParse_static.dir/smiles.tab.cpp.o -c > /«PKGBUILDDIR»/Code/GraphMol/SmilesParse/smiles.tab.cpp > Linking CXX static library libSubstructMatch_static.a > cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Substruct && > /usr/bin/cmake -P > CMakeFiles/SubstructMatch_static.dir/cmake_clean_target.cmake > cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Substruct && > /usr/bin/cmake -E cmake_link_script > CMakeFiles/SubstructMatch_static.dir/link.txt --verbose=1 > /usr/bin/ar cr libSubstructMatch_static.a > CMakeFiles/SubstructMatch_static.dir/SubstructMatch.cpp.o > CMakeFiles/SubstructMatch_static.dir/SubstructUtils.cpp.o > /usr/bin/ranlib libSubstructMatch_static.a > make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' > /usr/bin/cmake -E cmake_progress_report > /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 72 > [ 15%] Built target SubstructMatch_static > /usr/bin/cmake -E cmake_progress_report > /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles > [ 15%] Building CXX object > Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/smarts.tab.cpp.o > cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && > /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 > -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security > -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code > -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o > CMakeFiles/SmilesParse_static.dir/smarts.tab.cpp.o -c > /«PKGBUILDDIR»/Code/GraphMol/SmilesParse/smarts.tab.cpp > /usr/bin/cmake -E cmake_progress_report > /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 42 > [ 16%] Building CXX object > Code/GraphMol/CMakeFiles/GraphMol_static.dir/MolOps.cpp.o > cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ > -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector > --param=ssp-buffer-size=4 -Wformat -Werror=format-security > -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code > -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o > CMakeFiles/GraphMol_static.dir/MolOps.cpp.o -c > /«PKGBUILDDIR»/Code/GraphMol/MolOps.cpp > smiles.yy:25:0: warning: "YYDEBUG" redefined [enabled by default] > In file included from smiles.yy:21:0: > /«PKGBUILDDIR»/Code/GraphMol/SmilesParse/smiles.tab.hpp:37:0: note: this is > the location of the previous definition > # define YYDEBUG 0 > ^ > /usr/bin/cmake -E cmake_progress_report > /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles > [ 16%] Building CXX object > Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms_static.dir/MolFragmenter.cpp.o > cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms && > /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 > -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security > -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code > -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o > CMakeFiles/ChemTransforms_static.dir/MolFragmenter.cpp.o -c > /«PKGBUILDDIR»/Code/GraphMol/ChemTransforms/MolFragmenter.cpp > /usr/bin/cmake -E cmake_progress_report > /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles > [ 16%] Building CXX object > Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/MDLParser.cpp.o > cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && > /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 > -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security > -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code > -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o > CMakeFiles/ChemReactions_static.dir/MDLParser.cpp.o -c > /«PKGBUILDDIR»/Code/GraphMol/ChemReactions/MDLParser.cpp > smarts.yy:25:0: warning: "YYDEBUG" redefined [enabled by default] > In file included from smarts.yy:20:0: > /«PKGBUILDDIR»/Code/GraphMol/SmilesParse/smarts.tab.hpp:37:0: note: this is > the location of the previous definition > # define YYDEBUG 0 > ^ > /usr/bin/cmake -E cmake_progress_report > /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles > [ 16%] Building CXX object > Code/GraphMol/CMakeFiles/GraphMol_static.dir/FindRings.cpp.o > cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ > -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector > --param=ssp-buffer-size=4 -Wformat -Werror=format-security > -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code > -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o > CMakeFiles/GraphMol_static.dir/FindRings.cpp.o -c > /«PKGBUILDDIR»/Code/GraphMol/FindRings.cpp > /usr/bin/cmake -E cmake_progress_report > /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles > [ 16%] Building CXX object > Code/GraphMol/CMakeFiles/GraphMol_static.dir/ROMol.cpp.o > cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ > -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector > --param=ssp-buffer-size=4 -Wformat -Werror=format-security > -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code > -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o > CMakeFiles/GraphMol_static.dir/ROMol.cpp.o -c > /«PKGBUILDDIR»/Code/GraphMol/ROMol.cpp > Linking CXX static library libForceField_static.a > cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/cmake -P > CMakeFiles/ForceField_static.dir/cmake_clean_target.cmake > /«PKGBUILDDIR»/Code/GraphMol/SmilesParse/smiles.tab.cpp: In function 'int > yysmiles_parse(const char*, std::vector<RDKit::RWMol*>*, std::list<unsigned > int>*, void*)': > /«PKGBUILDDIR»/Code/GraphMol/SmilesParse/smiles.tab.cpp:1264:30: error: too > few arguments to function 'int yysmiles_lex(YYSTYPE*, void*)' > yychar = yylex (&yylval); > ^ > smiles.yy:23:12: note: declared here > cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/cmake -E > cmake_link_script CMakeFiles/ForceField_static.dir/link.txt --verbose=1 > /usr/bin/ar cr libForceField_static.a > CMakeFiles/ForceField_static.dir/ForceField.cpp.o > CMakeFiles/ForceField_static.dir/UFF/AngleBend.cpp.o > CMakeFiles/ForceField_static.dir/UFF/BondStretch.cpp.o > CMakeFiles/ForceField_static.dir/UFF/Nonbonded.cpp.o > CMakeFiles/ForceField_static.dir/UFF/TorsionAngle.cpp.o > CMakeFiles/ForceField_static.dir/UFF/DistanceConstraint.cpp.o > CMakeFiles/ForceField_static.dir/UFF/Params.cpp.o > /usr/bin/ranlib libForceField_static.a > make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' > /usr/bin/cmake -E cmake_progress_report > /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 31 32 > [ 16%] Built target ForceField_static > make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs_static.dir/build.make > Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs_static.dir/depend > make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' > cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends > "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/Subgraphs > /«PKGBUILDDIR»/obj-x86_64-linux-gnu > /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs > /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs_static.dir/DependInfo.cmake > --color= > Scanning dependencies of target Subgraphs_static > make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' > make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs_static.dir/build.make > Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs_static.dir/build > make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' > /usr/bin/cmake -E cmake_progress_report > /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles > [ 16%] Building CXX object > Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs_static.dir/Subgraphs.cpp.o > cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && > /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 > -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security > -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code > -I/«PKGBUILDDIR»/External/boost-numeric-bindings -Wno-deprecated > -Wno-unused-function -fno-strict-aliasing -fPIC -o > CMakeFiles/Subgraphs_static.dir/Subgraphs.cpp.o -c > /«PKGBUILDDIR»/Code/GraphMol/Subgraphs/Subgraphs.cpp > make[3]: *** > [Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/smiles.tab.cpp.o] > Error 1 The full build log is available from: http://aws-logs.debian.net/ftbfs-logs/2013/12/26/rdkit_201306-2_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
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--- Begin Message ---Source: rdkit Source-Version: 201309-1 We believe that the bug you reported is fixed in the latest version of rdkit, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 733...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Daniel Leidert <dleid...@debian.org> (supplier of updated rdkit package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Format: 1.8 Date: Sun, 29 Dec 2013 01:53:13 +0100 Source: rdkit Binary: python-rdkit rdkit-doc rdkit-data librdkit1 librdkit-dev Architecture: source amd64 all Version: 201309-1 Distribution: unstable Urgency: low Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org> Changed-By: Daniel Leidert <dleid...@debian.org> Description: librdkit-dev - Collection of cheminformatics and machine-learning software (deve librdkit1 - Collection of cheminformatics and machine-learning software (shar python-rdkit - Collection of cheminformatics and machine-learning software rdkit-data - Collection of cheminformatics and machine-learning software (data rdkit-doc - Collection of cheminformatics and machine-learning software (docu Closes: 733359 Changes: rdkit (201309-1) unstable; urgency=low . * New upstream release. . [ Daniel Leidert ] * debian/control (Standards-Version): Bumped to 3.9.5. * debian/patches/733359_bison3_compatibility.patch: Added. - Fix syntax for bison 3.x to fix FTBFS (closes: #733359). * debian/patches/series: Added. Checksums-Sha1: 61687e756d4f0bdae99b73f5d914cfb304a9f883 1638 rdkit_201309-1.dsc 81b546a7b96bd3dd25ddb85a45e77223cf800e40 23366242 rdkit_201309.orig.tar.gz ed840576e76101f94b6e0f5208423b4f180804a9 7693 rdkit_201309-1.debian.tar.gz 26c51dca54ab55116c676de932e9d78c3f609076 1706456 python-rdkit_201309-1_amd64.deb be00e20dc08b8412f359a6eb879f983144352ed1 4261570 rdkit-doc_201309-1_all.deb 75047cbff4e0b6d0c670fb6a099934380ba3742c 4505152 rdkit-data_201309-1_all.deb 9a9709bb2aea6de365aeaab3e16fbe12f61f65c8 1457620 librdkit1_201309-1_amd64.deb 7c268ae49a9de02df6fca09a1d70b318075a61ee 181738 librdkit-dev_201309-1_amd64.deb Checksums-Sha256: f41e04b1ec6276e6476e87684548a9e101ee2d80608a2c00bfdaae0e09dc096e 1638 rdkit_201309-1.dsc 459ffabbca831cb85f7b5663ddd47fbf779d83f2bc8264231a2287168af7f01e 23366242 rdkit_201309.orig.tar.gz 9bf844262394a9efc8db26bb1bfddf27f5af35a2793d723fdd1f6476ede6e161 7693 rdkit_201309-1.debian.tar.gz 9e1c4e0d23efd921e5c05426b55e01af6430f94b953f79778d650fccd1908e8b 1706456 python-rdkit_201309-1_amd64.deb a6db2e9e226a12c906eeaa03d9b0ed749ed9364ef17853f997b2a79a11c9aa21 4261570 rdkit-doc_201309-1_all.deb b5aa526b9479abdc5830ee1f8d056c23b047e4e59138690f64025a36d4202421 4505152 rdkit-data_201309-1_all.deb 6f830f5a49087c53cd2bd661351854665a3588e4dca56cac2ad35d5ce4092388 1457620 librdkit1_201309-1_amd64.deb b6c2a72ccceb427583365b745065f06370dd234af12dad849dc760c369f57c1d 181738 librdkit-dev_201309-1_amd64.deb Files: 059f60f89e1cfba8d02d0cf8bb6be255 1638 science optional rdkit_201309-1.dsc b061d71faba3c5d58f6f576cb480c211 23366242 science optional rdkit_201309.orig.tar.gz cfc3c532d0a697b835993c581ab4adde 7693 science optional rdkit_201309-1.debian.tar.gz a7a3365327ae27e941d9e60b405458f0 1706456 python optional python-rdkit_201309-1_amd64.deb b50bc938c5ec51d3e4d188b13ae1fb00 4261570 doc optional rdkit-doc_201309-1_all.deb 99979c0e8f6278519bdd68d39012b5a3 4505152 science optional rdkit-data_201309-1_all.deb 6e4c9e5d1674913bd1e29f5d1cffc356 1457620 libs optional librdkit1_201309-1_amd64.deb 065725f17a13b96fbd8d56cf0dfba616 181738 libdevel optional librdkit-dev_201309-1_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.15 (GNU/Linux) iEYEARECAAYFAlK/d+EACgkQm0bx+wiPa4wOUgCgwyUDC8AWwsCeKOmvWHgiSd6u UNMAoNXVcScOO17+CormJr8uMDaqfRTG =fVdi -----END PGP SIGNATURE-----
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