Your message dated Mon, 02 Dec 2013 16:48:45 +0000 with message-id <e1vnwft-0005h5...@franck.debian.org> and subject line Bug#728650: fixed in hmmer 3.1b1-3 has caused the Debian Bug report #728650, regarding FTBFS on PowerPC, patch attached. to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 728650: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=728650 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: hmmer Version: 3.1b1-2 Severity: serious Tags: patch User: ubuntu-de...@lists.ubuntu.com Usertags: origin-ubuntu trusty ubuntu-patch In Ubuntu, the attached patch was applied to achieve the following: * Stop selecting vmx DP implementation on powerpc to resolve FTBFS. I'm not sure how this ever worked before, since this debian/rules bit reverses the logic of the patch in debian-changes-3.0-2.1, however it builds fine here if I drop the bit from rules and revert to the dummy implementation, as was used in previous uploads. ... Adam -- System Information: Debian Release: wheezy/sid APT prefers trusty-updates APT policy: (500, 'trusty-updates'), (500, 'trusty-security'), (500, 'trusty') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 3.12.0-1-generic (SMP w/4 CPU cores) Locale: LANG=en_CA.UTF-8, LC_CTYPE=en_CA.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dashdiff -Nru hmmer-3.1b1/debian/changelog hmmer-3.1b1/debian/changelog diff -Nru hmmer-3.1b1/debian/rules hmmer-3.1b1/debian/rules --- hmmer-3.1b1/debian/rules 2013-10-24 00:37:39.000000000 -0600 +++ hmmer-3.1b1/debian/rules 2013-11-03 11:50:15.000000000 -0700 @@ -11,11 +11,7 @@ ifeq (amd64,$(ARCH)) DEB_CONFIGURE_EXTRA_FLAGS := --enable-threads --enable-sse else - ifeq (powerpc,$(ARCH)) - DEB_CONFIGURE_EXTRA_FLAGS := --enable-threads --enable-vmx - else DEB_CONFIGURE_EXTRA_FLAGS := --enable-threads - endif endif override_dh_auto_configure:
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--- Begin Message ---Source: hmmer Source-Version: 3.1b1-3 We believe that the bug you reported is fixed in the latest version of hmmer, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 728...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated hmmer package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Format: 1.8 Date: Mon, 02 Dec 2013 17:24:47 +0100 Source: hmmer Binary: hmmer hmmer-doc Architecture: source amd64 all Version: 3.1b1-3 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: hmmer - profile hidden Markov models for protein sequence analysis hmmer-doc - profile hidden Markov models for protein sequence analysis (docs) Closes: 728650 Changes: hmmer (3.1b1-3) unstable; urgency=low . * Apply patch from Adam Conrad <adcon...@debian.org> to build on powerpc (thanks to Adam for the patch) Closes: #728650 * DEP3 patch headers * cme fix dpkg-control Checksums-Sha1: 8b7c3bd21c227c0554adbb54981a1fdfb3d8023d 1473 hmmer_3.1b1-3.dsc 9e1b4ccd2323b78d56268e583f3220a82a7e1879 6973 hmmer_3.1b1-3.debian.tar.gz 64fccdb421f173f60591d09470f481dd2c5fce7a 1025520 hmmer_3.1b1-3_amd64.deb 8b5cfdcd6a40177eae85df3044255179d5f38292 920194 hmmer-doc_3.1b1-3_all.deb Checksums-Sha256: d034b0f124e5367c15f547b7f4ac8ad73d02383685dddd04f7163afe0c45d824 1473 hmmer_3.1b1-3.dsc 9397471e6164298690d450ad28fe07e701e28710526870b0ec60bad42a8cb59c 6973 hmmer_3.1b1-3.debian.tar.gz 343e9a912076dbc91de51f07b023603886eb88e858f76c52c2d0819f2bef0601 1025520 hmmer_3.1b1-3_amd64.deb 86fb28eeb107df6037b61914410d78748ce422a8b0470de54cdbb12d8287f3d6 920194 hmmer-doc_3.1b1-3_all.deb Files: 2072db95a9f926bb88dcc5b77f83316a 1473 science optional hmmer_3.1b1-3.dsc c4316ae0316c343e7bfbe14a73d04dbf 6973 science optional hmmer_3.1b1-3.debian.tar.gz a2720261a62fa27836d263742b0925de 1025520 science optional hmmer_3.1b1-3_amd64.deb ad7a3e174d14642f4518ed2011255be1 920194 doc optional hmmer-doc_3.1b1-3_all.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.15 (GNU/Linux) iEYEARECAAYFAlKcuHwACgkQYDBbMcCf01r6CwCgmGms9/XzD1uTYoY9NCwH9uCZ CXwAn1L2lJm84VLmtwpSvZwulZu2FJYW =ivxb -----END PGP SIGNATURE-----
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