Your message dated Wed, 04 Sep 2013 06:48:01 +0000 with message-id <e1vh6sj-0006qc...@franck.debian.org> and subject line Bug#721773: fixed in biomaj 1.2.2-2 has caused the Debian Bug report #721773, regarding biomaj: fails to install: database configuration problem to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 721773: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=721773 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: biomaj Version: 1.2.2-1 Severity: serious User: debian...@lists.debian.org Usertags: piuparts Hi, during a test with piuparts I noticed your package failed to install. As per definition of the release team this makes the package too buggy for a release, thus the severity. >From the attached log (scroll to the bottom...): debconf: delaying package configuration, since apt-utils is not installed Fetched 4763 kB in 0s (33.2 MB/s) Selecting previously unselected package biomaj. (Reading database ... 13419 files and directories currently installed.) Unpacking biomaj (from .../biomaj_1.2.2-1_all.deb) ... Setting up biomaj (1.2.2-1) ... /var/lib/dpkg/info/biomaj.config: 17: [: =: unexpected operator You need to configure the database access before executing the upgrade Execute the script manually once configuration is done Died at /var/lib/biomaj/migration/update.pl line 32. *************************************************************************************** Before running the migration, please check that database configuration is correctly set and that the database schema and user are correctly created. To upgrade the database, the script must be run with the following arguments: For a first install, all arguments are mandatory, for an upgrade, only some parameters are required. - First install: [ -dbuser DBUSER -dbpwd DBPASSWORD -dbhost DBHOST -db (mysql|hsql)] - From v1.1 : [ -admin LOGIN -adminpwd PASSWORD -adminemail ADMINEMAIL] To get the current version, execute: biomaj --version dpkg: error processing biomaj (--configure): subprocess installed post-installation script returned error exit status 2 Errors were encountered while processing: biomaj piuparts tests are run with DEBIAN_FRONTEND=oninteractive, so no debconf questions will be asked and the defaults are used. A mysql database server was running inside the chroot where the test was performed. cheers, Andreas
biomaj_1.2.2-1.log.gz
Description: GNU Zip compressed data
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--- Begin Message ---Source: biomaj Source-Version: 1.2.2-2 We believe that the bug you reported is fixed in the latest version of biomaj, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 721...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Olivier Sallou <osal...@debian.org> (supplier of updated biomaj package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Fri, 30 Aug 2013 12:11:50 +0200 Source: biomaj Binary: biomaj biomaj-properties Architecture: source all Version: 1.2.2-2 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: biomaj - biological data-bank updater biomaj-properties - biological data-bank updater - example properties files Closes: 721773 Changes: biomaj (1.2.2-2) unstable; urgency=low . * d/postinst: Fix install in noninteractive mode (Closes: #721773). Checksums-Sha1: 0e59cb20ef07e4bff0e4e521da2b3eb50679e0ef 2483 biomaj_1.2.2-2.dsc bdb8762d1962be266d4e6f4873a808f10c1df392 26545 biomaj_1.2.2-2.debian.tar.gz 5d40f86e01bfc7017cdf4bd7f1a641f89267c68d 4763056 biomaj_1.2.2-2_all.deb ba971612387bf9455348510db08474961dd8d511 26538 biomaj-properties_1.2.2-2_all.deb Checksums-Sha256: 6e6ffc71f5f81380f8b14941ddc2eaa515c0a0d8284f701aaf588ffb2e526657 2483 biomaj_1.2.2-2.dsc bb56e22e6757af6dd37872f06448f98781bfcfeac8384287143b88804c99f862 26545 biomaj_1.2.2-2.debian.tar.gz 62d8070e6465364d2bf8a817854e9c71cdb84697073fe96ccd1af0897e147e90 4763056 biomaj_1.2.2-2_all.deb a3e0975988fcb27849cdd8334d906909d5d5183584d2cfef7a741ce0d68288bc 26538 biomaj-properties_1.2.2-2_all.deb Files: a4bacf4c4ef0f76d48462553855d5baa 2483 science optional biomaj_1.2.2-2.dsc beeb32c17c2cc9399ae67ff732ddced0 26545 science optional biomaj_1.2.2-2.debian.tar.gz 0faba1fc9490606f34265cc8cb874e54 4763056 science optional biomaj_1.2.2-2_all.deb 7fc456d7e6cf093f96e62975eaa7445d 26538 science optional biomaj-properties_1.2.2-2_all.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.14 (GNU/Linux) iQIcBAEBCAAGBQJSJtYkAAoJEHjcaNsybYQ4NKUP/3brZXsjFlS/uEh5RgEWWkCR tpseH1671zQ7L01MzKBMNDF6qqnVBMXw947oqXLtjcFjZcSLLWoEYvEfxgBVwVTp j09ym9mm6oHUBpujNNoUpq0aLjUTna+9arOlZmC5zVwDwH5U8wsgr5H9UldjAXfb jSHvIZ2RUW5fsfEGyTda/rCnskszeGr85ausDiWhJEwBlGPsXGyQ/+Wv7obdHN4H jigcjxX1qWzuc7PDOVifjCJUupBINZf2Bk67lRY8JiTERAxxhR0nulf7bvl3/fpW 75/8iE9TGbrpwFfczjIH3UHkxNvIyd8VhVq0kxO7NDkKe+TeMLF0o3kBvZna6tU5 eO5AhvO+3K23+yDTcsUGa0136QPHNArxTHBDE8AVf0mYEssWgzUti8rjkhEMPYNh 06pe+BW/8uBPns0AO9QwOZVz1i6vuPxc3DdkGFTKYPmUj4ncJR1JJmxPUw/tH7+b 3v/XZIRTGWDLejF4pzIdaA/lqi/RsC4I+41VcpVjUhKS8R5UDjA1UTbLf1pQ4Vm7 z9juEQ4ycMg7VWlp06fJZMzgByiE5yO2TvUAKGIOOIGVdzR2Ao4X+ovJHOr/fdFe 06oVp27PDej5v6y2gz+55M4rbDSrfAcZ+tlb3QbSbBavHZFdRcav8VipwCzF6uA+ mYQsgUvKl7gCUQAFXTC+ =djds -----END PGP SIGNATURE-----
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