Your message dated Sun, 11 Aug 2013 21:19:01 +0000 with message-id <e1v8d2t-0007zx...@franck.debian.org> and subject line Bug#718001: fixed in gromacs 4.6.3-2 has caused the Debian Bug report #718001, regarding gromacs-mpich, gromacs-openmpi: fails to upgrade from wheezy - trying to overwrite /usr/lib/libgmxpreprocess_mpi_d.mpich.so to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 718001: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=718001 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: gromacs-mpich,gromacs-openmpi Version: 4.6.3-1 Severity: serious User: debian...@lists.debian.org Usertags: piuparts Hi, during a test with piuparts I noticed your package fails to upgrade from 'wheezy'. It installed fine in 'wheezy', then the upgrade to 'jessie' fails because it tries to overwrite other packages files without declaring a Breaks+Replaces relation. See policy 7.6 at http://www.debian.org/doc/debian-policy/ch-relationships.html#s-replaces >From the attached log (scroll to the bottom...): Selecting previously unselected package gromacs-mpich. Unpacking gromacs-mpich (from .../gromacs-mpich_4.6.3-1_amd64.deb) ... dpkg: error processing /var/cache/apt/archives/gromacs-mpich_4.6.3-1_amd64.deb (--unpack): trying to overwrite '/usr/lib/libgmxpreprocess_mpi_d.mpich.so', which is also in package gromacs-dev 4.5.5-2 Errors were encountered while processing: /var/cache/apt/archives/gromacs-mpich_4.6.3-1_amd64.deb Selecting previously unselected package gromacs-openmpi. Unpacking gromacs-openmpi (from .../gromacs-openmpi_4.6.3-1_amd64.deb) ... dpkg: error processing /var/cache/apt/archives/gromacs-openmpi_4.6.3-1_amd64.deb (--unpack): trying to overwrite '/usr/lib/libgmxpreprocess_mpi_d.openmpi.so', which is also in package gromacs-dev 4.5.5-2 Errors were encountered while processing: /var/cache/apt/archives/gromacs-openmpi_4.6.3-1_amd64.deb cheers, Andreas
gromacs-dev=4.5.5-2_gromacs-mpich=4.6.3-1.log.gz
Description: GNU Zip compressed data
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--- Begin Message ---Source: gromacs Source-Version: 4.6.3-2 We believe that the bug you reported is fixed in the latest version of gromacs, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 718...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Nicholas Breen <nbr...@debian.org> (supplier of updated gromacs package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sun, 11 Aug 2013 13:05:19 -0700 Source: gromacs Binary: gromacs gromacs-data gromacs-dev gromacs-mpich gromacs-openmpi Architecture: source all amd64 Version: 4.6.3-2 Distribution: unstable Urgency: low Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org> Changed-By: Nicholas Breen <nbr...@debian.org> Description: gromacs - Molecular dynamics simulator, with building and analysis tools gromacs-data - GROMACS molecular dynamics sim, data and documentation gromacs-dev - GROMACS molecular dynamics sim, development kit gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization Closes: 718001 Changes: gromacs (4.6.3-2) unstable; urgency=low . * control: - Add B-Ds for external BLAS/LAPACK libraries. - Have -dev Replaces/Breaks earlier versions of -openmpi/-mpich to handle file move. (Closes: #718001) - For gromacs, remove Conflicts with a long-obsolete (before squeeze) version of radiance, and add Suggests on pymol for visualization. * rules: Specify verbose output from CMake. Checksums-Sha1: 4148fe9b12e29ab949588469b14298c1cd09d118 2335 gromacs_4.6.3-2.dsc bb0876aef0c80a5ef32014a14cac38fbfb7ec73b 31248 gromacs_4.6.3-2.debian.tar.gz 9aa2d73619b28361ccdb0857f7a8dd536065ebad 1030060 gromacs-data_4.6.3-2_all.deb 32e258cd8de08bc640edc3de3098a81b1868973a 9733890 gromacs_4.6.3-2_amd64.deb 610a28830c104ad147cb19931fc25ef6bf0babb4 252430 gromacs-dev_4.6.3-2_amd64.deb 3a7f215c746d5eb4bbbbb098bf59456b09620803 7300136 gromacs-mpich_4.6.3-2_amd64.deb 422048952e6b7a9c3579985a60c1657362013105 7302344 gromacs-openmpi_4.6.3-2_amd64.deb Checksums-Sha256: fb6026a977617b8441a3552d7d4918cf2e2bcaf51a281daaddd875bf37115a93 2335 gromacs_4.6.3-2.dsc 98954a0234ba2b76fd98fb93b7f52f4dccbf66bc1ec0574f200c81d207ba2d80 31248 gromacs_4.6.3-2.debian.tar.gz ac56824e8517642f8be5e626ff52a1d55ef09d3dea701622dcbfc0f634ea5820 1030060 gromacs-data_4.6.3-2_all.deb d53f0168b102f8ebd8ea37b7172fbc6b05aab097e0a988dd4f846c818ca7b363 9733890 gromacs_4.6.3-2_amd64.deb 6904a31a7a684a8a366b3fc2cbc56e8bcdc09c75c0540e655086563b7bfdba02 252430 gromacs-dev_4.6.3-2_amd64.deb 6d28969fb66560507c645eb713f80be563cc68e1eb85c9d8d674cb0d42bad154 7300136 gromacs-mpich_4.6.3-2_amd64.deb efe8450e9c7b5c6daebbe575771d2ab901b7478213f33c3fde5b4f1f293e5fa7 7302344 gromacs-openmpi_4.6.3-2_amd64.deb Files: 12782da3afb94acff7ec32016a5cfab9 2335 science extra gromacs_4.6.3-2.dsc 153ee4abca2f399c152e00d72bddb889 31248 science extra gromacs_4.6.3-2.debian.tar.gz 5d07ee654bd4e033ba16f77f83e8efb1 1030060 science extra gromacs-data_4.6.3-2_all.deb aafea78f0dd01c68a01a6a8ac363f6d8 9733890 science extra gromacs_4.6.3-2_amd64.deb e34ddbe16a6d525cbd7b710e32df163e 252430 devel extra gromacs-dev_4.6.3-2_amd64.deb 02915cee0bee957193e7b7d72eba6ab1 7300136 science extra gromacs-mpich_4.6.3-2_amd64.deb f35025ffb7b5a85cc22d324ce360d7ae 7302344 science extra gromacs-openmpi_4.6.3-2_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.14 (GNU/Linux) iQIVAwUBUgf3Au5K/WnsZRCPAQiPcBAArkWMPdozgXMhdAE9EDf+YvhGdjHd/5bz sz0wDeL+93edrwfhcpxOSa61Pplo1qR3/2SLGblZQrNQV2295aXbQFpIxfuu5Cxj VcSkAONC68gyqjDDtYSqcU+n1EUpnmQrLvXJ6sGP7EuKE8W74cStcSJV1bSLQElz /uVBbUENg/OhVSCoDzbD+dXG51CJ99pi0/vmHKgZ4zXcAD6IleddDiY2JK38baze b4GiGYx4AP32zzto9/vPK2LB0IN+CfgwZSwWXhS6rOy5AhnOACcEJkSpze/wIDaO KYonjPNPvYNlYb0Niw1AXYuWwgRI6nHgfH1/xmqnGU1MQTuZz3jVO6IDpI1M9qgl aYrl+AnWrAEufcMXLKbkoJHZIk50cY6MWJYkUljojiJ/y+GnWsDRZFYQlLNP9vvN EsqhwHI6ZUn4Cn+ZMVrmHe9V8WUr/FP02D9in++j9ThmtFBSm+g454uEpEKPXwA1 wcrxjbAIEBxsZmV4DPRomUQegEXyMVTrYx2SmH+E8MeskEpyhdtVEMyENVu40F2r 8YFpweYvTHuQPV1OrpClu6GHG5pSKI0BfFKqTOSq2MGS2zDg2BJzllLTy+LO30HQ t9uVSOcXeadIZKqBHcg57JhHaPEnjrzzcbfY8XASc9qsGcqpKGi0wYOeO21fQeNN 9OwhN16JJ64= =Ozuj -----END PGP SIGNATURE-----
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