Hi guys, we recently passed through a process of removing all the remaining bits of GPL code from FreeCAD. All the scripts stated above (Draft, draftlibs, makeBottle, etc) have either been converted to LGPL or removed from the source. Next time you pull the code from us the warnings above should al be gone. If something is still GPL, it is an error from our part, just notify us and we'll fix it.
About SoQt, it is part of the coin3D library, which switched last year from GPL to BSD. I noticed that the latest package of coin (libcoin80) already shows the BSD license. Maybe libsoqt4-20 needs to be updated too to reflect the new license. I guess that would solve all the remaining issues... We're doing all we can to keep FreeCAD in debian, but it sometimes really seems like an impossible task... Thanks a lot Anton for the dedication you've put into this so far, nobody can blame you if you decide you've had enough. Cheers to all, Yorik