Package: libsbml5-cil
Version: 5.6.0-1
Severity: serious
User: debian...@lists.debian.org
Usertags: piuparts, broken-symlink, broken-symlink-shared-library
Hi,
During a test with piuparts, I noticed your package is
responsible for the presence of broken symlinks involving
a shared library. Such failures may indicate a significant
problem with the package.
Usually this is caused by a missing Depends. It may also be
triggered if a Recommended or reverse dependency package
owning the symlink target file is not yet installed. This type
of failure mode needs to be eliminated so that other symlink
problems become more visible. In this case, the problem can be
resolved by creating a trigger for the target file. See the
dpkg triggers documentation[1] and an example on the net[2] for
implementation details.
This is being filed as Serious because it represents a violation
of Policy. Section 8 states "Packages containing shared
libraries must be constructed with a little care to make sure
that the shared library is always available".
A link to the log containing the indicated broken symlinks can
be found on piuparts.debian.org[3]. Search for "Warn: Broken
Symlinks" to see the failure point. A log showing the broken
symlink as an error is appended.
The log contains the following broken symlinks:
/usr/lib/mono/libsbmlcsP/libsbml.so
-> ../../libsbml.so
[1] - file:///usr/share/doc/dpkg-dev/triggers.txt.gz
[2] - http://www.seanius.net/blog/2009/09/dpkg-triggers-howto/
[3] - http://piuparts.debian.org/sid/broken_symlinks_issue.html
----------
Start: 2013-07-05 21:59:45 EST
Package: libsbml5-cil
Source: libsbml
Version: 5.6.0-1
Installed-Size: 5436
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Architecture: amd64
Provides: libsbml-cil
Depends: libbz2-1.0, libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libsbml5, libstdc++6
(>= 4.6), libxml2 (>= 2.7.4), zlib1g (>= 1:1.1.4)
Description: System Biology Markup Language library - CLR binding
Homepage: http://www.sbml.org/
Description-md5: 526645fd5ac0eed729bf48bc3ad25c45
Section: cli-mono
Priority: optional
Filename: pool/main/libs/libsbml/libsbml5-cil_5.6.0-1_amd64.deb
Size: 1614602
MD5sum: 7b086c53b9896beb09ad6457efca64a7
SHA1: e1002cbed66f49ac05506518315e503f69914da0
SHA256: b43dda51337962d8c1824c0504ad7557c5b0c3fd77db79c05759d1ac2ef57fa8
Executing: sudo piuparts --scriptsdir /etc/piuparts/scripts
--skip-logrotatefiles-test --warn-on-others --fail-on-broken-symlinks --mirror
http://127.0.0.1/debian --tmpdir /var/tmp --arch amd64 -b
/var/cache/piuparts/basetgz/sid.tar.gz -d sid --no-upgrade-test --apt
libsbml5-cil=5.6.0-1
0m0.0s INFO:
------------------------------------------------------------------------------
0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of
this logfile.
0m0.0s INFO: FAQ available at http://wiki.debian.org/piuparts/FAQ
0m0.0s INFO:
------------------------------------------------------------------------------
0m0.0s INFO: piuparts version 0.54~201306172307~0.53-14-ge8900a0 starting up.
0m0.0s INFO: Command line arguments: '/usr/sbin/piuparts' '--scriptsdir'
'/etc/piuparts/scripts' '--skip-logrotatefiles-test' '--warn-on-others'
'--fail-on-broken-symlinks' '--mirror' 'http://127.0.0.1/debian' '--tmpdir'
'/var/tmp' '--arch' 'amd64' '-b' '/var/cache/piuparts/basetgz/sid.tar.gz' '-d'
'sid' '--no-upgrade-test' '--apt' 'libsbml5-cil=5.6.0-1'
0m0.0s INFO: Running on: Linux debian-testing 3.9-1-amd64 #1 SMP Debian 3.9.8-1
x86_64
0m0.0s DEBUG: Created temporary directory /var/tmp/tmpcVRSl_
0m0.0s DEBUG: Unpacking /var/cache/piuparts/basetgz/sid.tar.gz into
/var/tmp/tmpcVRSl_
0m0.0s DEBUG: Starting command: ['tar', '-C', '/var/tmp/tmpcVRSl_', '-zxf',
'/var/cache/piuparts/basetgz/sid.tar.gz']
0m1.4s DEBUG: Command ok: ['tar', '-C', '/var/tmp/tmpcVRSl_', '-zxf',
'/var/cache/piuparts/basetgz/sid.tar.gz']
0m1.4s DEBUG: Starting command: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'mount', '-t', 'proc', 'proc', '/proc']
0m1.4s DEBUG: Command ok: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'mount', '-t', 'proc', 'proc', '/proc']
0m1.4s DEBUG: sources.list:
deb http://127.0.0.1/debian sid main
deb http://127.0.0.1/debian sid contrib
deb http://127.0.0.1/debian sid non-free
0m1.4s DEBUG: Created policy-rc.d and chmodded it.
0m1.4s DEBUG: Starting command: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'apt-get', 'update']
0m6.5s DUMP:
Get:1 http://127.0.0.1 sid InRelease [205 kB]
Get:2 http://127.0.0.1 sid/main amd64 Packages [6398 kB]
Get:3 http://127.0.0.1 sid/contrib amd64 Packages [48.5 kB]
Get:4 http://127.0.0.1 sid/non-free amd64 Packages [84.6 kB]
Get:5 http://127.0.0.1 sid/contrib Translation-en [39.9 kB]
Get:6 http://127.0.0.1 sid/main Translation-en [4246 kB]
Get:7 http://127.0.0.1 sid/non-free Translation-en [72.7 kB]
Fetched 11.1 MB in 3s (2959 kB/s)
Reading package lists...
0m6.5s DEBUG: Command ok: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'apt-get', 'update']
0m6.5s DEBUG: Starting command: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'apt-get', '-yf', 'dist-upgrade']
0m7.9s DUMP:
Reading package lists...
Building dependency tree...
The following packages will be upgraded:
apt libapt-pkg4.12 libc-bin libc6 multiarch-support
5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 8332 kB of archives.
After this operation, 132 kB of additional disk space will be used.
Get:1 http://127.0.0.1/debian/ sid/main libc-bin amd64 2.17-7 [1298 kB]
Get:2 http://127.0.0.1/debian/ sid/main libc6 amd64 2.17-7 [4624 kB]
Get:3 http://127.0.0.1/debian/ sid/main libapt-pkg4.12 amd64 0.9.9 [926 kB]
Get:4 http://127.0.0.1/debian/ sid/main apt amd64 0.9.9 [1323 kB]
Get:5 http://127.0.0.1/debian/ sid/main multiarch-support amd64 2.17-7 [160
kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 8332 kB in 0s (40.1 MB/s)
(Reading database ... 6639 files and directories currently installed.)
Preparing to replace libc-bin 2.17-6 (using .../libc-bin_2.17-7_amd64.deb) ...
Unpacking replacement libc-bin ...
Setting up libc-bin (2.17-7) ...
(Reading database ... 6639 files and directories currently installed.)
Preparing to replace libc6:amd64 2.17-6 (using .../libc6_2.17-7_amd64.deb) ...
Unpacking replacement libc6:amd64 ...
Setting up libc6:amd64 (2.17-7) ...
Processing triggers for libc-bin ...
(Reading database ... 6639 files and directories currently installed.)
Preparing to replace libapt-pkg4.12:amd64 0.9.8.2 (using
.../libapt-pkg4.12_0.9.9_amd64.deb) ...
Unpacking replacement libapt-pkg4.12:amd64 ...
Setting up libapt-pkg4.12:amd64 (0.9.9) ...
Processing triggers for libc-bin ...
(Reading database ... 6639 files and directories currently installed.)
Preparing to replace apt 0.9.8.2 (using .../archives/apt_0.9.9_amd64.deb) ...
Unpacking replacement apt ...
Setting up apt (0.9.9) ...
gpg: key B98321F9: "Squeeze Stable Release Key
<debian-rele...@lists.debian.org>" not changed
gpg: key 473041FA: "Debian Archive Automatic Signing Key (6.0/squeeze)
<ftpmas...@debian.org>" not changed
gpg: key 65FFB764: "Wheezy Stable Release Key
<debian-rele...@lists.debian.org>" not changed
gpg: key 46925553: "Debian Archive Automatic Signing Key (7.0/wheezy)
<ftpmas...@debian.org>" not changed
gpg: Total number processed: 4
gpg: unchanged: 4
(Reading database ... 6639 files and directories currently installed.)
Preparing to replace multiarch-support 2.17-6 (using
.../multiarch-support_2.17-7_amd64.deb) ...
Unpacking replacement multiarch-support ...
Setting up multiarch-support (2.17-7) ...
0m7.9s DEBUG: Command ok: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'apt-get', '-yf', 'dist-upgrade']
0m7.9s DEBUG: Copying scriptsdir /etc/piuparts/scripts to
/var/tmp/tmpcVRSl_/tmp/scripts/
0m7.9s INFO: Running scripts post_setup
0m7.9s DEBUG: Starting command: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'tmp/scripts/post_setup_experimental']
0m7.9s DEBUG: Command ok: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'tmp/scripts/post_setup_experimental']
0m7.9s DEBUG: Starting command: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'tmp/scripts/post_setup_forbid_home']
0m7.9s DUMP:
Disabling /home
0m7.9s DEBUG: Command ok: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'tmp/scripts/post_setup_forbid_home']
0m7.9s DEBUG: Starting command: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'tmp/scripts/post_setup_squeeze-backports']
0m7.9s DEBUG: Command ok: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'tmp/scripts/post_setup_squeeze-backports']
0m7.9s DEBUG: Starting command: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'apt-get', 'clean']
0m7.9s DEBUG: Command ok: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'apt-get', 'clean']
0m9.0s DEBUG: Starting command: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'dpkg', '--get-selections', '*']
0m9.0s DUMP:
apt install
base-files install
base-passwd install
bash install
bsdutils install
coreutils install
dash install
debconf install
debconf-i18n install
debian-archive-keyring install
debianutils install
diffutils install
dpkg install
e2fslibs:amd64 install
e2fsprogs install
eatmydata install
findutils install
gcc-4.7-base:amd64 install
gcc-4.8-base:amd64 install
gnupg install
gpgv install
grep install
gzip install
hostname install
initscripts install
insserv install
libacl1:amd64 install
libapt-pkg4.12:amd64 install
libattr1:amd64 install
libblkid1:amd64 install
libbz2-1.0:amd64 install
libc-bin install
libc6:amd64 install
libcap2:amd64 install
libcomerr2:amd64 install
libdb5.1:amd64 install
libgcc1:amd64 install
liblocale-gettext-perl install
liblzma5:amd64 install
libmount1 install
libncurses5:amd64 install
libpam-modules:amd64 install
libpam-modules-bin install
libpam-runtime install
libpam0g:amd64 install
libpcre3:amd64 install
libreadline6:amd64 install
libselinux1:amd64 install
libsemanage-common install
libsemanage1:amd64 install
libsepol1:amd64 install
libslang2:amd64 install
libss2:amd64 install
libstdc++6:amd64 install
libtext-charwidth-perl install
libtext-iconv-perl install
libtext-wrapi18n-perl install
libtinfo5:amd64 install
libusb-0.1-4:amd64 install
libustr-1.0-1:amd64 install
libuuid1:amd64 install
login install
lsb-base install
mawk install
mount install
multiarch-support install
ncurses-base install
ncurses-bin install
passwd install
perl-base install
readline-common install
sed install
sensible-utils install
sysv-rc install
sysvinit install
sysvinit-utils install
tar install
tzdata install
util-linux install
zlib1g:amd64 install
0m9.0s DEBUG: Command ok: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata', 'dpkg',
'--get-selections', '*']
0m9.0s DEBUG: Starting command: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'dpkg-divert', '--list']
0m9.0s DUMP:
diversion of /usr/share/man/man1/sh.1.gz to
/usr/share/man/man1/sh.distrib.1.gz by dash
diversion of /bin/sh to /bin/sh.distrib by dash
0m9.0s DEBUG: Command ok: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'dpkg-divert', '--list']
0m9.0s INFO: Starting install/purge
0m9.0s INFO: apt-cache does not know about any of the requested packages
0m9.0s INFO: Running scripts pre_test
0m9.0s DEBUG: Starting command: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'tmp/scripts/pre_test_root_password']
0m9.0s DUMP:
Enter new UNIX password: Retype new UNIX password: passwd: password updated
successfully
0m9.0s DEBUG: Command ok: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'tmp/scripts/pre_test_root_password']
0m9.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/var/tmp/tmpcVRSl_']
0m9.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w',
'+D', '/var/tmp/tmpcVRSl_']
0m10.5s DEBUG: No broken symlinks as far as we can find.
0m10.5s INFO: Running scripts pre_install
0m10.5s DEBUG: Starting command: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'tmp/scripts/pre_install_database-server']
0m10.5s DEBUG: Command ok: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'tmp/scripts/pre_install_database-server']
0m10.5s DEBUG: Starting command: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'tmp/scripts/pre_install_exceptions']
0m10.5s DEBUG: Command ok: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'tmp/scripts/pre_install_exceptions']
0m10.5s DEBUG: Starting command: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'tmp/scripts/pre_install_foreign_architecture_i386']
0m10.5s DEBUG: Command ok: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'tmp/scripts/pre_install_foreign_architecture_i386']
0m10.5s DEBUG: Starting command: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'apt-cache', 'show', 'libsbml5-cil']
0m12.0s DUMP:
Package: libsbml5-cil
Source: libsbml
Version: 5.6.0-1
Installed-Size: 5436
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Architecture: amd64
Provides: libsbml-cil
Depends: libbz2-1.0, libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libsbml5,
libstdc++6 (>= 4.6), libxml2 (>= 2.7.4), zlib1g (>= 1:1.1.4)
Description-en: System Biology Markup Language library - CLR binding
LibSBML is a library designed to help you read, write, manipulate,
translate, and validate SBML files and data streams. It is not an
application itself (though it does come with many example programs),
but rather a library you can embed in your own applications.
This package contains the CLR binding of LibSBML.
Description-md5: 526645fd5ac0eed729bf48bc3ad25c45
Homepage: http://www.sbml.org/
Description-md5: 526645fd5ac0eed729bf48bc3ad25c45
Section: cli-mono
Priority: optional
Filename: pool/main/libs/libsbml/libsbml5-cil_5.6.0-1_amd64.deb
Size: 1614602
MD5sum: 7b086c53b9896beb09ad6457efca64a7
SHA1: e1002cbed66f49ac05506518315e503f69914da0
SHA256: b43dda51337962d8c1824c0504ad7557c5b0c3fd77db79c05759d1ac2ef57fa8
0m12.0s DEBUG: Command ok: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'apt-cache', 'show', 'libsbml5-cil']
0m12.0s DEBUG: Starting command: ['dpkg-deb', '-b', '--nocheck',
'/var/tmp/tmp0tABj9/piuparts-depends-dummy']
0m12.0s DUMP:
dpkg-deb: warning: not checking contents of control area
dpkg-deb: building an unknown package in
'/var/tmp/tmp0tABj9/piuparts-depends-dummy.deb'.
0m12.0s DEBUG: Command ok: ['dpkg-deb', '-b', '--nocheck',
'/var/tmp/tmp0tABj9/piuparts-depends-dummy']
0m12.0s DEBUG: Copying /var/tmp/tmp0tABj9/piuparts-depends-dummy.deb to
/var/tmp/tmpcVRSl_/tmp
0m12.0s DEBUG: Starting command: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb']
0m12.0s DUMP:
Selecting previously unselected package piuparts-depends-dummy.
(Reading database ... 6639 files and directories currently installed.)
Unpacking piuparts-depends-dummy (from tmp/piuparts-depends-dummy.deb) ...
dpkg: dependency problems prevent configuration of piuparts-depends-dummy:
piuparts-depends-dummy depends on libsbml5; however:
Package libsbml5 is not installed.
piuparts-depends-dummy depends on libxml2 (>= 2.7.4); however:
Package libxml2 is not installed.
dpkg: error processing piuparts-depends-dummy (--install):
dependency problems - leaving unconfigured
Errors were encountered while processing:
piuparts-depends-dummy
0m12.0s DEBUG: Command failed (status=1), but ignoring error: ['chroot',
'/var/tmp/tmpcVRSl_', 'eatmydata', 'dpkg', '-i',
'tmp/piuparts-depends-dummy.deb']
0m12.0s DEBUG: Starting command: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'apt-get', '-yf', 'install']
0m12.7s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
Correcting dependencies... Done
The following extra packages will be installed:
libsbml5 libxml2
Recommended packages:
xml-core
The following NEW packages will be installed:
libsbml5 libxml2
0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded.
1 not fully installed or removed.
Need to get 2132 kB of archives.
After this operation, 5613 kB of additional disk space will be used.
Get:1 http://127.0.0.1/debian/ sid/main libxml2 amd64 2.9.1+dfsg1-2 [911 kB]
Get:2 http://127.0.0.1/debian/ sid/main libsbml5 amd64 5.6.0-1 [1221 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 2132 kB in 0s (27.2 MB/s)
Selecting previously unselected package libxml2:amd64.
(Reading database ... 6639 files and directories currently installed.)
Unpacking libxml2:amd64 (from .../libxml2_2.9.1+dfsg1-2_amd64.deb) ...
Selecting previously unselected package libsbml5.
Unpacking libsbml5 (from .../libsbml5_5.6.0-1_amd64.deb) ...
Setting up libxml2:amd64 (2.9.1+dfsg1-2) ...
Setting up libsbml5 (5.6.0-1) ...
Setting up piuparts-depends-dummy (0.invalid.0) ...
Processing triggers for libc-bin ...
0m12.7s DEBUG: Command ok: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'apt-get', '-yf', 'install']
0m12.7s INFO: Installation of ['tmp/piuparts-depends-dummy.deb'] ok
0m12.7s DEBUG: Removing /var/tmp/tmpcVRSl_/tmp/piuparts-depends-dummy.deb
0m12.7s DEBUG: Starting command: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'dpkg', '--purge', 'piuparts-depends-dummy']
0m12.7s DUMP:
(Reading database ... 6661 files and directories currently installed.)
Removing piuparts-depends-dummy ...
0m12.7s DEBUG: Command ok: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'dpkg', '--purge', 'piuparts-depends-dummy']
0m12.7s DEBUG: Starting command: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'apt-get', 'clean']
0m12.7s DEBUG: Command ok: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'apt-get', 'clean']
0m13.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/var/tmp/tmpcVRSl_']
0m14.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w',
'+D', '/var/tmp/tmpcVRSl_']
0m15.0s DEBUG: No broken symlinks as far as we can find.
0m15.0s DEBUG: Starting command: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'apt-cache', 'policy']
0m16.3s DUMP:
Package files:
100 /var/lib/dpkg/status
release a=now
500 http://127.0.0.1/debian/ sid/non-free Translation-en
500 http://127.0.0.1/debian/ sid/main Translation-en
500 http://127.0.0.1/debian/ sid/contrib Translation-en
500 http://127.0.0.1/debian/ sid/non-free amd64 Packages
release o=Debian,a=unstable,n=sid,l=Debian,c=non-free
origin 127.0.0.1
500 http://127.0.0.1/debian/ sid/contrib amd64 Packages
release o=Debian,a=unstable,n=sid,l=Debian,c=contrib
origin 127.0.0.1
500 http://127.0.0.1/debian/ sid/main amd64 Packages
release o=Debian,a=unstable,n=sid,l=Debian,c=main
origin 127.0.0.1
Pinned packages:
0m16.3s DEBUG: Command ok: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'apt-cache', 'policy']
0m16.3s DEBUG: Starting command: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'apt-cache', 'policy', 'libsbml5-cil']
0m16.3s DUMP:
libsbml5-cil:
Installed: (none)
Candidate: 5.6.0-1
Version table:
5.6.0-1 0
500 http://127.0.0.1/debian/ sid/main amd64 Packages
0m16.3s DEBUG: Command ok: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'apt-cache', 'policy', 'libsbml5-cil']
0m16.3s DEBUG: Starting command: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'apt-get', '-y', 'install', 'libsbml5-cil=5.6.0-1']
0m16.8s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
libsbml5-cil
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 1615 kB of archives.
After this operation, 5566 kB of additional disk space will be used.
Get:1 http://127.0.0.1/debian/ sid/main libsbml5-cil amd64 5.6.0-1 [1615 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 1615 kB in 0s (19.8 MB/s)
Selecting previously unselected package libsbml5-cil.
(Reading database ... 6661 files and directories currently installed.)
Unpacking libsbml5-cil (from .../libsbml5-cil_5.6.0-1_amd64.deb) ...
Setting up libsbml5-cil (5.6.0-1) ...
0m16.8s DEBUG: Command ok: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'apt-get', '-y', 'install', 'libsbml5-cil=5.6.0-1']
0m16.8s INFO: Running scripts post_install
0m16.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/var/tmp/tmpcVRSl_']
0m17.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w',
'+D', '/var/tmp/tmpcVRSl_']
0m18.0s ERROR: FAIL: Broken symlinks:
/usr/lib/mono/libsbmlcsP/libsbml.so -> ../../libsbml.so
0m18.4s DEBUG: Starting command: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'umount', '/proc']
0m18.4s DEBUG: Command ok: ['chroot', '/var/tmp/tmpcVRSl_', 'eatmydata',
'umount', '/proc']
0m18.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system',
'/var/tmp/tmpcVRSl_']
0m18.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system',
'/var/tmp/tmpcVRSl_']
0m18.4s DEBUG: Removed directory tree at /var/tmp/tmpcVRSl_
0m18.4s ERROR: piuparts run ends.
ret=1
End: 2013-07-05 22:00:04 EST
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