tags 684162 + pending thanks Dear maintainer,
I've prepared an NMU for neobio (versioned as 0.0.20030929-1.1) and uploaded it to DELAYED/2. Please feel free to tell me if I should delay it longer. PS: Also committed and tagged in svn. Regards. -- .''`. Homepage: http://info.comodo.priv.at/ - OpenPGP key 0xBB3A68018649AA06 : :' : Debian GNU/Linux user, admin, and developer - http://www.debian.org/ `. `' Member of VIBE!AT & SPI, fellow of the Free Software Foundation Europe `- NP: Kurt Ostbahn: Manxmoi
diff -Nru neobio-0.0.20030929/debian/changelog neobio-0.0.20030929/debian/changelog --- neobio-0.0.20030929/debian/changelog 2012-05-30 11:22:19.000000000 +0200 +++ neobio-0.0.20030929/debian/changelog 2013-05-22 18:53:43.000000000 +0200 @@ -1,3 +1,23 @@ +neobio (0.0.20030929-1.1) unstable; urgency=low + + [ Andreas Tille ] + * Enhanced short description + + [ gregor herrmann ] + * Non-maintainer upload. + * Fix "Transition package to default java implementation": + apply patch from Ubuntu / James Page: + + * Transition package to default java implementation: + - d/control: BD on default-jdk (>= 1:1.6), switch runtime dependency + to default-jre | java6-runtime. + - d/rules: Specify source/target = 1.5 to ensure that backwards + compatible bytecode is built. + + (Closes: #684162) + + -- gregor herrmann <gre...@debian.org> Wed, 22 May 2013 18:53:39 +0200 + neobio (0.0.20030929-1) unstable; urgency=low * Initial release (Closes: #647543) diff -Nru neobio-0.0.20030929/debian/control neobio-0.0.20030929/debian/control --- neobio-0.0.20030929/debian/control 2012-05-30 11:12:25.000000000 +0200 +++ neobio-0.0.20030929/debian/control 2013-05-22 18:55:57.000000000 +0200 @@ -2,8 +2,9 @@ Section: science Priority: extra Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> -Uploaders: Christoph Gille <christoph...@googlemail.com> -Build-Depends: debhelper (>= 8), openjdk-6-jdk | sun-java6-jdk, javahelper (>=0.25) +Uploaders: Christoph Gille <christoph...@googlemail.com>, + Andreas Tille <ti...@debian.org> +Build-Depends: debhelper (>= 8), default-jdk (>= 1:1.6), javahelper (>=0.25) Standards-Version: 3.9.3 Homepage: http://neobio.sourceforge.net/ Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/neobio/trunk/ @@ -11,10 +12,10 @@ Package: neobio Architecture: all -Depends: openjdk-6-jre | sun-java6-jre, java-wrappers, ${misc:Depends}, ${java:Depends} +Depends: default-jre | java6-runtime, java-wrappers, ${misc:Depends}, ${java:Depends} Suggests: strap Enhances: strap -Description: pairwise sequence alignments +Description: computes alignments of amino acid and nucleotide sequences Library and graphical user interface for pairwise sequence alignments. Implementation of the dynamic programming methods of Needleman & Wunsch (global alignment) and Smith & Waterman (local alignment). diff -Nru neobio-0.0.20030929/debian/rules neobio-0.0.20030929/debian/rules --- neobio-0.0.20030929/debian/rules 2012-05-30 11:12:11.000000000 +0200 +++ neobio-0.0.20030929/debian/rules 2013-05-22 18:55:19.000000000 +0200 @@ -12,7 +12,7 @@ override_dh_auto_build: mkdir -p classes - javac -cp src -d classes $(shell find src -name "*.java") + javac -cp src -source 1.5 -target 1.5 -d classes $(shell find src -name "*.java") jar -cf neobio-$(VERSION).jar -C classes neobio -C bin neobio/gui/icons override_dh_clean:
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