Your message dated Wed, 10 Apr 2013 15:33:17 +0000 with message-id <e1upx1r-0001fc...@franck.debian.org> and subject line Bug#705139: fixed in soapdenovo2 223+dfsg-1 has caused the Debian Bug report #705139, regarding soapdenovo2: FTBFS on non-amd64: linker errors to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 705139: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=705139 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: soapdenovo2 Version: 223-2 Severity: serious Justification: fails to build from source Hi, Olivier. Builds of soapdenovo2 on ia64 and kfreebsd-amd64 both failed with linker errors. The ia64 build failed with /usr/bin/ld: skipping incompatible ./inc/libbam.a when searching for -lbam /usr/bin/ld: cannot find -lbam collect2: ld returned 1 exit status make[2]: *** [SOAPdenovo] Error 1 Please get rid of the prebuilt libbam.a (a DFSG violation!) and build depend on libbam-dev. The kfreebsd-amd64 build didn't reject that libbam.a outright, but reported undefined references to several bam* and sam* symbols, and for that matter to a handful of aio_* symbols, which I suspect you could resolve by linking against -laio from libaio-dev. Could you please take a look? You can find the full logs on buildd.debian.org: https://buildd.debian.org/status/fetch.php?pkg=soapdenovo2&arch=ia64&ver=223-2&stamp=1365543888 https://buildd.debian.org/status/fetch.php?pkg=soapdenovo2&arch=kfreebsd-amd64&ver=223-2&stamp=1365543478 BTW, directing upstream's build system to indicate which commands it's actually running would make it easier to tell what's going wrong.
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--- Begin Message ---Source: soapdenovo2 Source-Version: 223+dfsg-1 We believe that the bug you reported is fixed in the latest version of soapdenovo2, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 705...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Olivier Sallou <osal...@debian.org> (supplier of updated soapdenovo2 package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 10 Apr 2013 17:27:22 +0200 Source: soapdenovo2 Binary: soapdenovo2 Architecture: source amd64 Version: 223+dfsg-1 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: soapdenovo2 - short-read assembly method to build de novo draft assembly Closes: 705139 Changes: soapdenovo2 (223+dfsg-1) unstable; urgency=low . * debian/copyright: remove .a files from upstream archive (Closes: #705139). debian/patches: update patches after lib removal debian/control: add bam and aio lib dependencies Checksums-Sha1: e9b01e8130aceebac91aa16fa6a86b55dcc50655 2118 soapdenovo2_223+dfsg-1.dsc c50289c340bc7b127312fabb68d31caeadddbb1a 357309 soapdenovo2_223+dfsg.orig.tar.gz 2fa6b443104e98511e0050e0eecf6693f59585bd 4825 soapdenovo2_223+dfsg-1.debian.tar.gz 08dfa914a7e456aec2b2b893a474170f5ab7abba 574472 soapdenovo2_223+dfsg-1_amd64.deb Checksums-Sha256: 11b277a18929ed4158859d84f6aa31b7d186ef647e7738b2d710a1666312f38d 2118 soapdenovo2_223+dfsg-1.dsc 0a12be1de9ebfd63de9910459b00e933106e1f88e6ab6bf478ec9e0ecc55060d 357309 soapdenovo2_223+dfsg.orig.tar.gz 06c41400b948eacbb67a5a8349c901cb205fcbed4fe4b5b0a36a70699ef954d1 4825 soapdenovo2_223+dfsg-1.debian.tar.gz 29371d8ba6382f81ce5f5c16e1fae9ffa5094a983eec827fda25b775edd0f72e 574472 soapdenovo2_223+dfsg-1_amd64.deb Files: b3bdc04972f4cb414c59945d29cbc043 2118 science optional soapdenovo2_223+dfsg-1.dsc e8c8ab2e39e89428821a13ca31f435e8 357309 science optional soapdenovo2_223+dfsg.orig.tar.gz b2a5816b38ef18c2ea2b9e574ea98e05 4825 science optional soapdenovo2_223+dfsg-1.debian.tar.gz 39445ae8135d8b27ac6c35a9a4e257e5 574472 science optional soapdenovo2_223+dfsg-1_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.12 (GNU/Linux) iQIcBAEBCAAGBQJRZYU7AAoJEHjcaNsybYQ4MaYP/jWopKICF3TEERJZ6pKY6v3Q gHQefNmvpetv4gTgSpl3wYtbwhnA3yrINY2PT/yF1brxzYwyTKxbdiOAKGL/WLdJ xpNUVc6wO3rjsTHOgtJlaA/Y9aEMWranFF2bznboQ35Rf3QiPNZNmMtq/X28PJ9B Gz7VhynuWbbDBcQDuiUH9agMEdVMVFB9ZHXbejlwDdQdTuExcp9TU3/7hgnQ0yuO IYm7fbsliq0moFXyhzVRaEK/7YYmgWkwMz40gMTdSOjjbUwaMsr4TEj/jmWRb5he TP75rOkItFA9WqRw4hbp83YpV1P2WfLvP9M3QqE2xcGykAbtIr+XgcqPxQH65Lmy dZhnLM6HCepYMFFncKMmp0dKZv6I4FkvCYMi+Mz6UXGPJCIqpns/JCLyRuXFMIfq 7euGMAWPHp5WcdSebGxNoajFkAfERJmt6RNRAxUuQPBoXsIOCkwnWVJ+yfA5Ypbq yrgjlpHUpTJzi9QM4vmW5/7K9b8/eh+ITGvI/PqUGx5ZzJPuGtdk5zBQBqCHon5q 5231Ho2hPKXrxqEmuGmjQ7ehdjmvET+HYBJ9Bzs6y408cmFqSL14q9PngGRByoLD Tb93pDXElMSpBej2vD6Bvfgyu1buMxngelcHNzcZmxO0wt5eGj2UHHgUXS2UF+Mp srsCqGjdYSSxAvtEIcpI =f3AV -----END PGP SIGNATURE-----
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