Your message dated Wed, 27 Feb 2013 16:17:41 +0000
with message-id <e1uajhn-0007hl...@franck.debian.org>
and subject line Bug#700525: fixed in sundials 2.5.0-3
has caused the Debian Bug report #700525,
regarding sundials: several binary packages not linked properly against blas
and lapack
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
700525: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=700525
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: sundials
Version: 2.5.0-1
Severity: normal
even though lapack is in the build dependencies and is picked up by the
configure step it is not linked against the libraries that need it and
is thus also lacking a binary dependency:
ldd -r /usr/lib/libsundials_cvodes.so.2
linux-vdso.so.1 => (0x00007fff77dff000)
/usr/lib/libeatmydata/libeatmydata.so (0x00007f8a152e4000)
/usr/lib/cowdancer/libcowdancer.so (0x00007f8a150e0000)
libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007f8a14e5b000)
libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f8a14ad1000)
libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007f8a148cd000)
/lib64/ld-linux-x86-64.so.2 (0x00007f8a1571c000)
undefined symbol: dcopy_ (/usr/lib/libsundials_cvodes.so.2)
undefined symbol: dscal_ (/usr/lib/libsundials_cvodes.so.2)
undefined symbol: dgbtrs_ (/usr/lib/libsundials_cvodes.so.2)
undefined symbol: dgbtrf_ (/usr/lib/libsundials_cvodes.so.2)
undefined symbol: dgetrf_ (/usr/lib/libsundials_cvodes.so.2)
undefined symbol: dgetrs_ (/usr/lib/libsundials_cvodes.so.2)
see also:
https://bugs.launchpad.net/ubuntu/+source/sundials/+bug/1124062
--- End Message ---
--- Begin Message ---
Source: sundials
Source-Version: 2.5.0-3
We believe that the bug you reported is fixed in the latest version of
sundials, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 700...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Sébastien Villemot <sebast...@debian.org> (supplier of updated sundials package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 27 Feb 2013 16:58:32 +0100
Source: sundials
Binary: libsundials-serial libsundials-cvode1 libsundials-cvodes2
libsundials-ida2 libsundials-idas0 libsundials-kinsol1 libsundials-nvecserial0
libsundials-serial-dev octave-sundials
Architecture: source amd64
Version: 2.5.0-3
Distribution: unstable
Urgency: low
Maintainer: Debian Science Team
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Sébastien Villemot <sebast...@debian.org>
Description:
libsundials-cvode1 - ordinary differentialequation solver (SUNDIALS library)
libsundials-cvodes2 - ODE solver with sensistivity analysis (SUNDIALS library)
libsundials-ida2 - differential-algebraic system solver (SUNDIALS library)
libsundials-idas0 - IDA solver with sensitivity capabilities (SUNDIALS library)
libsundials-kinsol1 - KINSOL solver (SUNDIALS library)
libsundials-nvecserial0 - vector operations library (SUNDIALS library)
libsundials-serial - SUit of Nonlinear and DIfferential/ALgebraic equation
Solvers
libsundials-serial-dev - SUNDIALS development files
octave-sundials - SUNDIALS for octave
Closes: 700525
Changes:
sundials (2.5.0-3) unstable; urgency=low
.
* Team upload.
* Revert changes from experimental version which inadvertently made it into
the previous upload.
* Improve the fix for missing BLAS and LAPACK dependencies (closes: #700525)
+ no longer pass BLAS and LAPACK through LDFLAGS
+ link-blas-lapack.patch: new patch which rather adds the dependencies at
the libtool link level
+ add missing dependency of libsundials-serial-dev on libblas-dev and
liblapack-dev
* Fix the dependency of octave-sundials on octave.
Checksums-Sha1:
d1fb018c3d7fef149ac082b070515f423cabbf74 2614 sundials_2.5.0-3.dsc
d089c6f1b649d905a0b600801398cc2f8870994d 63058 sundials_2.5.0-3.diff.gz
5d9636aadbbd29f40bc279d32946d2a4cdd12a10 8538
libsundials-serial_2.5.0-3_amd64.deb
451a52c08930362cf9f60cbff08659a61b891f4a 61794
libsundials-cvode1_2.5.0-3_amd64.deb
63cbf5d2a029c015beb35a7c196eec2288fb9596 100136
libsundials-cvodes2_2.5.0-3_amd64.deb
d60af43c74ea048b3068f8cedd4778a54d80b6aa 58322
libsundials-ida2_2.5.0-3_amd64.deb
cc296df6a33239ccd8f9c0f6d352c8665f820e1a 96840
libsundials-idas0_2.5.0-3_amd64.deb
dcc0a49022ea4d7853e6b71f10ac053c7b2d3288 47130
libsundials-kinsol1_2.5.0-3_amd64.deb
219b97817185b7f4f233baded57df9e718114d75 16272
libsundials-nvecserial0_2.5.0-3_amd64.deb
59195f9e276895e5f1a6ff9a6c39a2a75b3f8143 942698
libsundials-serial-dev_2.5.0-3_amd64.deb
084d2c18dc78ab1b276703654317fdc16656a995 379906
octave-sundials_2.5.0-3_amd64.deb
Checksums-Sha256:
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sundials_2.5.0-3.dsc
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sundials_2.5.0-3.diff.gz
f7db3d2f83449bd990c132ce0833e73d0d753dc029ed49a6223ca8d86784b80b 8538
libsundials-serial_2.5.0-3_amd64.deb
44def709f799dc84e90c649c6bca3d934be4f2e4c665e7fabf9b17341504c908 61794
libsundials-cvode1_2.5.0-3_amd64.deb
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libsundials-cvodes2_2.5.0-3_amd64.deb
9de4445abaa63ba758a2926c9992fb5c3c084be4accfe5625064b8905c05d758 58322
libsundials-ida2_2.5.0-3_amd64.deb
adb280e90a06c49f8274b0768d982d50b77cba5f63ec62bba451bd06be9063f4 96840
libsundials-idas0_2.5.0-3_amd64.deb
a82b94472b11205a21e5f21c8b99a389f716cc8337722752a559165a1800f06f 47130
libsundials-kinsol1_2.5.0-3_amd64.deb
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libsundials-nvecserial0_2.5.0-3_amd64.deb
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libsundials-serial-dev_2.5.0-3_amd64.deb
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octave-sundials_2.5.0-3_amd64.deb
Files:
50b790caa67ee2c17ad83ad005dc1e49 2614 libs optional sundials_2.5.0-3.dsc
ae53d35c3f916efd9b83ca571deadd04 63058 libs optional sundials_2.5.0-3.diff.gz
a1f30338925659358ff79c43f0336f69 8538 libs optional
libsundials-serial_2.5.0-3_amd64.deb
18302bb476e376e7d094e5554aeeb19c 61794 libs optional
libsundials-cvode1_2.5.0-3_amd64.deb
735e8bc4960120bdc2049e2e7fee4c54 100136 libs optional
libsundials-cvodes2_2.5.0-3_amd64.deb
47ae20ddd0b172529c2218ade9d1c84d 58322 libs optional
libsundials-ida2_2.5.0-3_amd64.deb
784f2879858acfab406e6636c5b38a27 96840 libs optional
libsundials-idas0_2.5.0-3_amd64.deb
263ff43ff8181c2f3dc4446fce746a11 47130 libs optional
libsundials-kinsol1_2.5.0-3_amd64.deb
bb34e55979e2ebd07af2577d134d90be 16272 libs optional
libsundials-nvecserial0_2.5.0-3_amd64.deb
a62f86945328f39ab3aa56caaacceec3 942698 libdevel optional
libsundials-serial-dev_2.5.0-3_amd64.deb
3b63aea1667cd0dfdc51526d3f94bc89 379906 libs optional
octave-sundials_2.5.0-3_amd64.deb
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