Your message dated Sat, 09 Feb 2013 03:17:36 +0000
with message-id <e1u40wa-0006u1...@franck.debian.org>
and subject line Bug#700088: fixed in boxshade 3.3.1-7+wheezy1
has caused the Debian Bug report #700088,
regarding boxshade: fails finding the alignment file
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
700088: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=700088
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: boxshade
Version: 3.3.1-7
Severity: important
Tags: patch
Dear Maintainer,
boxshade seems to have some problem to read the path of files from stdin, in
particular it mantains the trailing newline character as part of the name, as a
results the application is unusable.
Please considre the following patch as a possible fix (or workaround) for the
problem.
-------------------PATCH-------------------------------
--- boxshade-3.3.1.old/bx_read.c 2013-02-08 15:20:14.000000000 +0100
+++ boxshade-3.3.1.new/bx_read.c 2013-02-08 15:10:52.590377053 +0100
@@ -4,7 +4,9 @@
char *Gets(char *s, size_t length) {
fflush(stdout);
- return fgets(s,length,stdin);
+ fgets(s,length,stdin);
+ strtok(s, "\n");
+ return s;
}
/*
-----------------------------------------------------
All my best,
Giorgio Maccari.
-- System Information:
Debian Release: 7.0
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 3.7.0-6.dmz.1-liquorix-amd64 (SMP w/8 CPU cores; PREEMPT)
Locale: LANG=it_IT.utf8, LC_CTYPE=it_IT.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash
Versions of packages boxshade depends on:
ii libc6 2.13-38
boxshade recommends no packages.
Versions of packages boxshade suggests:
ii clustalw 2.1+lgpl-2
pn seaview <none>
ii texlive-latex-extra 2012.20120611-2
pn xfig <none>
-- no debconf information
--- boxshade-3.3.1.old/bx_read.c 2013-02-08 15:20:14.000000000 +0100
+++ boxshade-3.3.1.new/bx_read.c 2013-02-08 15:10:52.590377053 +0100
@@ -4,7 +4,9 @@
char *Gets(char *s, size_t length) {
fflush(stdout);
- return fgets(s,length,stdin);
+ fgets(s,length,stdin);
+ strtok(s, "\n");
+ return s;
}
/*
--- End Message ---
--- Begin Message ---
Source: boxshade
Source-Version: 3.3.1-7+wheezy1
We believe that the bug you reported is fixed in the latest version of
boxshade, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 700...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Charles Plessy <ple...@debian.org> (supplier of updated boxshade package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sat, 09 Feb 2013 11:57:21 +0900
Source: boxshade
Binary: boxshade
Architecture: source amd64
Version: 3.3.1-7+wheezy1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Charles Plessy <ple...@debian.org>
Description:
boxshade - Pretty-printing of multiple sequence alignments
Closes: 700088
Changes:
boxshade (3.3.1-7+wheezy1) unstable; urgency=low
.
* debian/patches/remove-newlines.patch: restores interactive use.
Thanks: Giorgio Maccari. Closes: #700088.
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Files:
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boxshade_3.3.1-7+wheezy1.dsc
7eb22f156b4e4ff0d1be92817b4c203a 21668 science optional
boxshade_3.3.1-7+wheezy1.debian.tar.gz
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