Your message dated Sun, 06 Jan 2013 16:32:36 +0000 with message-id <e1trt9i-0001ag...@franck.debian.org> and subject line Bug#697344: fixed in abyss 1.3.4-3 has caused the Debian Bug report #697344, regarding error: abyss has been compiled to use the POPCNT to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 697344: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=697344 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: abyss Version: 1.3.4-2 Severity: grave Trying to run abyss on Xeon E7340 leads to this error immediately after reading the fastq file: error: abyss has been compiled to use the POPCNT instruction, which this machine lacks. Recompile using configure --disable-popcnt to disable this feature. POPCNT instruction appeared along with SSE4.2. Please configure abyss Debian package to work on all i686 processors by using --disable-popcnt. Regards, Ognyan Kulev
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--- Begin Message ---Source: abyss Source-Version: 1.3.4-3 We believe that the bug you reported is fixed in the latest version of abyss, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 697...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated abyss package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Format: 1.8 Date: Fri, 04 Jan 2013 11:07:10 +0100 Source: abyss Binary: abyss Architecture: source amd64 Version: 1.3.4-3 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: abyss - de novo, parallel, sequence assembler for short reads Closes: 697344 Changes: abyss (1.3.4-3) unstable; urgency=low . * Disable POPCNT Closes: #697344 * Add debian/README.debian to inform users about this change asking for some comparison of the speed to consider other means for better performance Checksums-Sha1: 185d503dd0931bae35c3c92001b4240d794e4afe 1408 abyss_1.3.4-3.dsc 9f17d0c91018a203da52991cb735023b125df1db 9765 abyss_1.3.4-3.debian.tar.gz adec6e3e8233a32fa30c4a2fcd63d7bf5eb62717 1752548 abyss_1.3.4-3_amd64.deb Checksums-Sha256: 01364740c51515cbf3edd42a6e48841d4113133e638c5c62090bad620bc5b2a7 1408 abyss_1.3.4-3.dsc d9c9266b28612a1654648db479ef90c4f6cecf2942aa011173bcff3b30075510 9765 abyss_1.3.4-3.debian.tar.gz b65dd33de982440aeb8344ee8ef815abb2c2264fabe6e9e6cec84af1cd22e13c 1752548 abyss_1.3.4-3_amd64.deb Files: 946077ccf95f793318bce792f0fd40ea 1408 non-free/science optional abyss_1.3.4-3.dsc e2ab6fc006ccc97b08cd2b0ca620fbda 9765 non-free/science optional abyss_1.3.4-3.debian.tar.gz 66f4f7718b0b514f947fde9b914c80f6 1752548 non-free/science optional abyss_1.3.4-3_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.12 (GNU/Linux) iEYEARECAAYFAlDmq8gACgkQYDBbMcCf01pX+gCdH6mS5f7mBJwFIsLG0iE/+KQu b+UAoIkckobqUzQOJlkRPF2K/AhMHyni =Pokh -----END PGP SIGNATURE-----
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