Package: python-h5py
Version: 2.0.1-2+b1
Severity: serious
otherwise h5py is not usable with libhdf5 from experimental:
$> acpolicy python-h5py
python-h5py:
Installed: 2.0.1-2+b1
Candidate: 2.0.1-2+b1
Version table:
*** 2.0.1-2+b1 0
900 http://debian.lcs.mit.edu/debian/ wheezy/main amd64 Packages
600 http://debian.lcs.mit.edu/debian/ sid/main amd64 Packages
100 /var/lib/dpkg/status
$> acpolicy libhdf5-dev
libhdf5-dev:
Installed: 1.8.9-1~exp1
Candidate: 1.8.9-1~exp1
Version table:
*** 1.8.9-1~exp1 0
300 http://debian.lcs.mit.edu/debian/ experimental/main amd64 Packages
100 /var/lib/dpkg/status
1.8.8-9 0
900 http://debian.lcs.mit.edu/debian/ wheezy/main amd64 Packages
600 http://debian.lcs.mit.edu/debian/ sid/main amd64 Packages
$> python -c 'import h5py'
Warning! ***HDF5 library version mismatched error***
The HDF5 header files used to compile this application do not match
the version used by the HDF5 library to which this application is linked.
Data corruption or segmentation faults may occur if the application continues.
This can happen when an application was compiled by one version of HDF5 but
linked with a different version of static or shared HDF5 library.
You should recompile the application or check your shared library related
settings such as 'LD_LIBRARY_PATH'.
You can, at your own risk, disable this warning by setting the environment
variable 'HDF5_DISABLE_VERSION_CHECK' to a value of '1'.
Setting it to 2 or higher will suppress the warning messages totally.
Headers are 1.8.8, library is 1.8.9
SUMMARY OF THE HDF5 CONFIGURATION
=================================
General Information:
-------------------
HDF5 Version: 1.8.9
Configured on: Mon Oct 1 16:19:18 UTC 2012
Configured by: pbuilder@kornati
Configure mode: production
Host system: x86_64-pc-linux-gnu
Uname information: Linux kornati 3.2.0-3-amd64 #1 SMP Mon Jul 23
02:45:17 UTC 2012 x86_64 GNU/Linux
Byte sex: little-endian
Libraries:
Installation point: /usr
Compiling Options:
------------------
Compilation Mode: production
C Compiler: /usr/bin/cc
CFLAGS: -g -O2 -fstack-protector
--param=ssp-buffer-size=4 -Wformat -Werror=format-security
H5_CFLAGS: -std=c99 -pedantic -Wall -Wextra -Wundef
-Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align
-Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes
-Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs
-Winline -Wfloat-equal -Wmissing-format-attribute -Wmissing-noreturn -Wpacked
-Wdisabled-optimization -Wformat=2 -Wendif-labels -Wdeclaration-after-statement
-Wold-style-definition -Winvalid-pch -Wvariadic-macros -Winit-self
-Wmissing-include-dirs -Wswitch-default -Wswitch-enum -Wunused-macros
-Wunsafe-loop-optimizations -Wc++-compat -Wstrict-overflow -Wlogical-op
-Wlarger-than=2048 -Wvla -Wsync-nand -Wframe-larger-than=16384
-Wpacked-bitfield-compat -Wstrict-overflow=5 -Wjump-misses-init
-Wunsuffixed-float-constants -Wdouble-promotion -Wsuggest-attribute=const
-Wtrampolines -Wstack-usage=8192 -Wvector-operation-performance -O3
-fomit-frame-pointer -finline-functions
AM_CFLAGS:
CPPFLAGS: -D_FORTIFY_SOURCE=2
H5_CPPFLAGS: -D_POSIX_C_SOURCE=199506L -DNDEBUG
-UH5_DEBUG_API
AM_CPPFLAGS: -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-D_BSD_SOURCE
Shared C Library: yes
Static C Library: yes
Statically Linked Executables: no
LDFLAGS: -Wl,-z,relro
H5_LDFLAGS:
AM_LDFLAGS:
Extra libraries: -lpthread -lz -lrt -lm
Archiver: ar
Ranlib: ranlib
Debugged Packages:
API Tracing: no
Languages:
----------
Fortran: yes
Fortran Compiler: /usr/bin/gfortran
Fortran 2003 Compiler: no
Fortran Flags:
H5 Fortran Flags:
AM Fortran Flags: -g -O2
Shared Fortran Library: yes
Static Fortran Library: yes
C++: yes
C++ Compiler: /usr/bin/c++
C++ Flags: -g -O2 -fstack-protector
--param=ssp-buffer-size=4 -Wformat -Werror=format-security
H5 C++ Flags:
AM C++ Flags:
Shared C++ Library: yes
Static C++ Library: yes
Features:
---------
Parallel HDF5: no
High Level library: yes
Threadsafety: yes
Default API Mapping: v18
With Deprecated Public Symbols: yes
I/O filters (external): deflate(zlib)
I/O filters (internal): shuffle,fletcher32,nbit,scaleoffset
MPE: no
Direct VFD: no
dmalloc: no
Clear file buffers before write: yes
Using memory checker: no
Function Stack Tracing: no
GPFS: no
Strict File Format Checks: no
Optimization Instrumentation: no
Large File Support (LFS): yes
Bye...
[2] 21978 abort python -c 'import h5py'
-- System Information:
Debian Release: wheezy/sid
APT prefers testing
APT policy: (900, 'testing'), (600, 'unstable'), (300, 'experimental'), (100,
'stable')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 3.2.0-3-amd64 (SMP w/2 CPU cores)
Locale: LANG=en_US, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash
Versions of packages python-h5py depends on:
ii libc6 2.13-33
ii libhdf5-7 [libhdf5-7] 1.8.9-1~exp1
ii python 2.7.3-2
ii python-numpy [python-numpy-abi9] 1:1.6.2-1
ii python2.6 2.6.8-0.2
ii python2.7 2.7.3-4
python-h5py recommends no packages.
python-h5py suggests no packages.
-- no debconf information
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