Your message dated Tue, 23 Oct 2012 11:11:32 -0400
with message-id <udld309ql3v....@dr-wily.mit.edu>
and subject line Re: Bug#688689: Ping (Was: ncbi-blast+: trying to overwrite
'/usr/bin/seedtop', which is also in package blast2 1:2.2.26.20120620-2)
has caused the Debian Bug report #688689,
regarding ncbi-blast+: trying to overwrite '/usr/bin/seedtop', which is also in
package blast2 1:2.2.26.20120620-2
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
688689: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=688689
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: ncbi-blast+
Version: 2.2.26-3
Severity: normal
Dear Maintainer,
I hope everything is in the subject. ;-)
Regards,
Patrice.
-- System Information:
Debian Release: wheezy/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 3.2.0-3-amd64 (SMP w/24 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Versions of packages ncbi-blast+ depends on:
ii libbz2-1.0 1.0.6-4
ii libc6 2.13-35
ii libgcc1 1:4.7.2-2
ii libpcre3 1:8.31-1
ii libstdc++6 4.7.2-2
ii ncbi-data 6.1.20120620-2
ii perl 5.14.2-13
ii python 2.7.3-2
ii zlib1g 1:1.2.7.dfsg-13
ncbi-blast+ recommends no packages.
ncbi-blast+ suggests no packages.
-- no debconf information
--- End Message ---
--- Begin Message ---
Package: blast2
Version: 1:2.2.26.20120620-2
Andreas Tille <andr...@an3as.eu> writes:
> this is just a ping about this issue. I guess we need some solution
> soonish to get/keep ncbi-tools6 in Wheezy. Please let me know if some
> help might be needed.
Thanks for the reminder! I'd originally cloned #688684 because I'd
thought setting up alternatives might be in order; however, when the
conflicting executables turned out to have incompatible usages, Olivier
proceeded to address the issue by simply renaming ncbi-blast+'s seedtop
to seedtop+, so blast2 can stay as is. (I wouldn't bother formally
conflicting with the affected ncbi-blast+ version, which was never in
stable, or even testing IIRC.)
--
Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org)
http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu
--- End Message ---
