Your message dated Thu, 11 Oct 2012 21:37:18 -0700
with message-id <20121012043717.gv24...@ofb.net>
and subject line bug #680825 resolved
has caused the Debian Bug report #680825,
regarding gromacs: FTBFS: mv: cannot stat
`/«PKGBUILDDIR»/debian/gromacs-mpich/usr/lib/*.so': No such file or directory
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
680825: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=680825
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: gromacs
Version: 4.5.5-2
Severity: serious
Tags: wheezy sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20120708 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part:
> make[4]: Entering directory `/«PKGBUILDDIR»/build/openmpi-dp'
> [100%] Installing mdrun
> -- Install configuration: "Release"
> -- Install component: "libraries"
> -- Install configuration: "Release"
> -- Install component: "mdrun"
> make[4]: Leaving directory `/«PKGBUILDDIR»/build/openmpi-dp'
> [100%] Built target install-mdrun
> make[3]: Leaving directory `/«PKGBUILDDIR»/build/openmpi-dp'
> make[2]: Leaving directory `/«PKGBUILDDIR»/build/openmpi-dp'
> make[1]: Leaving directory `/«PKGBUILDDIR»/build/openmpi-dp'
> dh_installman -pgromacs-openmpi debian/man/mdrun_mpi.openmpi.1
> dh_link -pgromacs-openmpi usr/share/man/man1/mdrun_mpi.openmpi.1.gz
> usr/share/man/man1/mdrun_mpi_d.openmpi.1.gz
> dh_lintian -pgromacs-openmpi
> dh_testdir
> dh_testroot
> dh_prep -pgromacs-data -pgromacs-dev
> # remove a duplicated file
> rm -f /«PKGBUILDDIR»/debian/gromacs/usr/share/gromacs/tutor/gmxdemo/demo_d
> dh_installdirs -pgromacs-data
> mv /«PKGBUILDDIR»/debian/gromacs/usr/share/gromacs/top \
> /«PKGBUILDDIR»/debian/gromacs-data/usr/share/gromacs
> mv /«PKGBUILDDIR»/debian/gromacs/usr/share/gromacs/tutor \
> /«PKGBUILDDIR»/debian/gromacs-data/usr/share/gromacs
> mv /«PKGBUILDDIR»/debian/gromacs/usr/share/gromacs/html \
> /«PKGBUILDDIR»/debian/gromacs-data/usr/share/doc/gromacs
> mv /«PKGBUILDDIR»/debian/gromacs/usr/share/man \
> /«PKGBUILDDIR»/debian/gromacs-data/usr/share/man
> # some of the default installation directories for documentation and
> # example shell scripts are not FHS-friendly; move them appropriately
> mv /«PKGBUILDDIR»/debian/gromacs/usr/bin/GMXRC* \
> /«PKGBUILDDIR»/debian/gromacs/usr/bin/completion* \
> /«PKGBUILDDIR»/debian/gromacs-data/usr/share/gromacs/shell-specific
> chmod 644
> /«PKGBUILDDIR»/debian/gromacs-data/usr/share/gromacs/shell-specific/*
> dh_link -pgromacs-data usr/share/doc/gromacs/html
> usr/share/doc/gromacs-data/html
> dh_link -pgromacs-data usr/share/doc/gromacs/html
> usr/share/doc/gromacs-dev/html
> # one lintian warning is overridden:
> # - script-not-executable: demo scripts outside of ATH
> dh_lintian -pgromacs-data
> # rename a pair of Perl scripts to drop the .pl extension (Policy 10.4)
> mv /«PKGBUILDDIR»/debian/gromacs/usr/bin/demux.pl
> /«PKGBUILDDIR»/debian/gromacs/usr/bin/demux
> mv /«PKGBUILDDIR»/debian/gromacs/usr/bin/xplor2gmx.pl
> /«PKGBUILDDIR»/debian/gromacs/usr/bin/xplor2gmx
> dh_installdirs -pgromacs-dev
> mv /«PKGBUILDDIR»/debian/gromacs/usr/include
> /«PKGBUILDDIR»/debian/gromacs-dev/usr/include
> # catch normal libraries plus all applicable MPI variants
> mv /«PKGBUILDDIR»/debian/gromacs/usr/lib/*.so
> /«PKGBUILDDIR»/debian/gromacs/usr/lib/pkgconfig
> /«PKGBUILDDIR»/debian/gromacs-dev/usr/lib
> mv /«PKGBUILDDIR»/debian/gromacs-mpich/usr/lib/*.so
> /«PKGBUILDDIR»/debian/gromacs-dev/usr/lib
> mv: cannot stat `/«PKGBUILDDIR»/debian/gromacs-mpich/usr/lib/*.so': No such
> file or directory
> make: *** [install] Error 1
The full build log is available from:
http://people.debian.org/~lucas/logs/2012/07/08/gromacs_4.5.5-2_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
tags 680825 - wheezy
thanks
cmake 2.8.9 is in testing now, so the gromacs FTBFS no longer occurs with any
release.
--- End Message ---
