Source: pynn Version: 0.7.2-1 Severity: serious Tags: wheezy sid User: debian...@lists.debian.org Usertags: qa-ftbfs-20120814 qa-ftbfs Justification: FTBFS in wheezy on amd64
Hi, During a rebuild of all packages in *wheezy*, your package failed to build on amd64. Relevant part: > make[1]: Entering directory `/«PKGBUILDDIR»' > for PYVER in `pyversions -d -r -v`; do \ > PYTHONPATH=`/bin/ls -d /«PKGBUILDDIR»/build/lib.*-$PYVER` > $PYTHON \ > /usr/bin/nosetests -s -v --exclude='_(nest|neuron)' test/; done > Failure: SkipTest () ... SKIP > Failure: SkipTest () ... SKIP > system.test_moose.test_recording ... SKIP > system.test_moose.test_synaptic_connections ... SKIP > Failure: SkipTest () ... SKIP > system.test_pcsim.test_PoissonInputNeuron ... SKIP > unittests.test_assembly.test_create_with_zero_populations ... ok > unittests.test_assembly.test_create_with_one_population ... ok > unittests.test_assembly.test_create_with_two_populations ... ok > unittests.test_assembly.test_create_with_non_population_should_raise_Exception > ... ok > unittests.test_assembly.test_size_property ... ok > unittests.test_assembly.test_positions_property ... ok > unittests.test_assembly.test__len__ ... ok > unittests.test_assembly.test_iter ... ok > unittests.test_assembly.test__add__population ... ok > unittests.test_assembly.test__add__assembly ... ok > unittests.test_assembly.test_add_inplace_population ... ok > unittests.test_assembly.test_add_inplace_assembly ... ok > unittests.test_assembly.test_add_invalid_object ... ok > unittests.test_assembly.test_initialize ... ok > unittests.test_assembly.test_describe ... ok > unittests.test_assembly.test_get_population ... ok > unittests.test_assembly.test_all_cells ... ok > unittests.test_assembly.test_local_cells ... ok > unittests.test_assembly.test_mask_local ... ok > unittests.test_assembly.test_save_positions ... ok > unittests.test_basepopulation.test__getitem__int ... ok > unittests.test_basepopulation.test__getitem__slice ... ok > unittests.test_basepopulation.test__getitem__list ... ok > unittests.test_basepopulation.test__getitem__tuple ... ok > unittests.test_basepopulation.test__getitem__invalid ... ok > unittests.test_basepopulation.test_len ... ok > unittests.test_basepopulation.test_iter ... ok > unittests.test_basepopulation.test_is_local ... ok > unittests.test_basepopulation.test_all ... ok > unittests.test_basepopulation.test_add ... ok > unittests.test_basepopulation.test_get_cell_position ... ok > unittests.test_basepopulation.test_set_cell_position ... ok > unittests.test_basepopulation.test_get_cell_initial_value ... ok > unittests.test_basepopulation.test_set_cell_initial_value ... ok > unittests.test_basepopulation.test_nearest ... ok > unittests.test_basepopulation.test_sample ... ok > unittests.test_basepopulation.test_get_should_call_get_array_if_it_exists ... > ok > unittests.test_basepopulation.test_get_with_no_get_array ... FAIL > unittests.test_basepopulation.test_get_with_gather ... ok > unittests.test_basepopulation.test_set_from_dict ... ok > unittests.test_basepopulation.test_set_from_pair ... ok > unittests.test_basepopulation.test_set_invalid_type ... ok > unittests.test_basepopulation.test_set_inconsistent_type ... ok > unittests.test_basepopulation.test_set_with_no_get_array ... ok > unittests.test_basepopulation.test_set_with_list ... ok > unittests.test_basepopulation.test_tset_with_numeric_values ... ok > unittests.test_basepopulation.test_tset_with_array_values ... ok > Population.tset(): If the size of the valueArray does not match that of the > Population, should raise an InvalidDimensionsError. ... ok > unittests.test_basepopulation.test_tset_invalid_dimensions_1D ... ok > Population.rset() ... ok > unittests.test_basepopulation.test_rset_with_native_rng ... ok > unittests.test_basepopulation.test_initialize ... ok > unittests.test_basepopulation.test_initialize_random_distribution ... ok > unittests.test_basepopulation.test_can_record ... ok > unittests.test_basepopulation.test__record ... ok > unittests.test_basepopulation.test__record_invalid_variable ... ok > unittests.test_basepopulation.test_invalid_record_from ... ok > unittests.test_basepopulation.test_spike_recording ... ok > unittests.test_basepopulation.test_record_v ... ok > unittests.test_basepopulation.test_record_gsyn ... ok > unittests.test_basepopulation.test_printSpikes ... ok > unittests.test_basepopulation.test_getSpikes ... ok > unittests.test_basepopulation.test_print_v ... ok > unittests.test_basepopulation.test_get_v ... ok > unittests.test_basepopulation.test_print_gsyn ... ok > unittests.test_basepopulation.test_get_gsyn ... ok > unittests.test_basepopulation.test_get_spike_counts ... ok > unittests.test_basepopulation.test_meanSpikeCount ... ok > unittests.test_basepopulation.test_meanSpikeCount_on_slave_node ... ok > unittests.test_basepopulation.test_inject ... ok > unittests.test_basepopulation.test_inject_into_invalid_celltype ... ok > unittests.test_basepopulation.test_save_positions ... ok > unittests.test_connectors.TestAllToAllConnector.test_connect_with_distance_dependent_weights_parallel_safe > ... ok > unittests.test_connectors.TestAllToAllConnector.test_connect_with_random_weights_parallel_safe > ... ok > unittests.test_connectors.TestAllToAllConnector.test_connect_with_scalar_weights_and_delays > ... ok > unittests.test_connectors.TestAllToAllConnector.test_create_with_delays_None > ... ok > unittests.test_connectors.TestAllToAllConnector.test_create_with_delays_too_small > ... ok > unittests.test_connectors.TestAllToAllConnector.test_create_with_list_delays_too_small > ... ok > unittests.test_connectors.TestDistanceDependentProbabilityConnector.test_connect_with_default_args > ... ok > unittests.test_connectors.TestDistanceMatrix.test_really_simple0 ... ok > unittests.test_connectors.TestDistanceMatrix.test_really_simple1 ... ok > unittests.test_connectors.TestFixedNumberPostConnector.test_with_n_smaller_than_population_size > ... ok > unittests.test_connectors.TestFixedNumberPreConnector.test_with_n_smaller_than_population_size > ... ok > unittests.test_connectors.TestFixedProbabilityConnector.test_connect_with_default_args > ... ok > unittests.test_connectors.TestFromFileConnector.test_connect_with_standard_text_file_distributed > ... ok > unittests.test_connectors.TestFromFileConnector.test_connect_with_standard_text_file_not_distributed > ... ok > unittests.test_connectors.TestFromListConnector.test_connect_with_out_of_range_index > ... ok > unittests.test_connectors.TestFromListConnector.test_connect_with_valid_list > ... ok > unittests.test_connectors.TestOneToOneConnector.test_connect_with_random_weights > ... ok > unittests.test_connectors.TestOneToOneConnector.test_connect_with_scalar_weights_and_delays > ... ok > unittests.test_core.test_is_list_like_with_tuple ... ok > unittests.test_core.test_is_list_like_with_list ... ok > unittests.test_core.test_is_list_like_with_iterator ... ok > unittests.test_core.test_is_list_like_with_set ... ok > unittests.test_core.test_is_list_like_with_numpy_array ... ok > unittests.test_core.test_is_list_like_with_string ... ok > unittests.test_core.test_create_with_int ... ok > unittests.test_core.test_create_with_float ... ok > unittests.test_core.test_create_with_list ... ok > unittests.test_core.test_create_with_array ... ok > unittests.test_core.test_create_inconsistent ... ok > unittests.test_core.test_create_with_string ... ok > unittests.test_core.test_setitem_nonexpanded_same_value ... ok > unittests.test_core.test_setitem_invalid_value ... ok > unittests.test_core.test_setitem_nonexpanded_different_value ... ok > unittests.test_core.test_columnwise_iteration_with_flat_array ... ok > unittests.test_core.test_columnwise_iteration_with_structured_array ... ok > unittests.test_core.test_columnwise_iteration_with_random_array_parallel_safe_no_mask > ... ok > unittests.test_core.test_columnwise_iteration_with_function ... ok > unittests.test_core.test_columnwise_iteration_with_flat_array_and_mask ... ok > unittests.test_core.test_columnwise_iteration_with_structured_array_and_mask > ... ok > unittests.test_core.test_columnwise_iteration_with_random_array_parallel_safe_with_mask > ... ok > unittests.test_core.test_as_array_with_flat_array ... ok > unittests.test_core.test_as_array_with_structured_array ... ok > unittests.test_core.test_as_array_with_functional_array ... ok > unittests.test_core.test_iadd_with_flat_array ... ok > unittests.test_core.test_add_with_flat_array ... ok > unittests.test_core.test_lt_with_flat_array ... ok > unittests.test_core.test_lt_with_structured_array ... ok > unittests.test_core.test_structured_array_lt_array ... ok > unittests.test_core.test_multiple_operations_with_structured_array ... ok > unittests.test_core.test_apply_function_to_constant_array ... ok > unittests.test_core.test_apply_function_to_structured_array ... ok > unittests.test_core.test_apply_function_to_functional_array ... ok > unittests.test_core.test_add_two_constant_arrays ... ok > unittests.test_core.test_add_incommensurate_arrays ... ok > unittests.test_core.test_getitem_from_constant_array ... ok > unittests.test_descriptions.test_get_default_template_engine ... ok > unittests.test_descriptions.test_render_with_no_template ... ok > unittests.test_descriptions.test_render_with_template ... ok > unittests.test_descriptions.test_StringTE_get_template ... ok > unittests.test_descriptions.test_StringTE_get_template_from_file ... ok > unittests.test_descriptions.test_StringTE_render ... ok > unittests.test_descriptions.test_Jinja2TE_get_template_from_file ... ok > unittests.test_descriptions.test_Jinja2TE_render ... ok > unittests.test_descriptions.test_CheetahTE_get_template_from_file ... ok > unittests.test_descriptions.test_CheetahTE_render ... ok > unittests.test_files.test__savetxt ... ok > unittests.test_files.test_create_BaseFile ... ok > unittests.test_files.test_del ... ok > unittests.test_files.test_close ... ok > unittests.test_files.test_StandardTextFile_write ... ok > unittests.test_files.test_StandardTextFile_read ... ok > unittests.test_files.test_PickleFile ... ok > unittests.test_files.test_NumpyBinaryFile ... ERROR > unittests.test_files.test_HDF5ArrayFile ... ok > unittests.test_idmixin.Test_IDMixin.test_celltype_property ... ok > unittests.test_idmixin.Test_IDMixin.test_get_initial_value ... ok > unittests.test_idmixin.Test_IDMixin.test_get_parameters ... ok > unittests.test_idmixin.Test_IDMixin.test_getattr_with_nonparameter_attr ... ok > unittests.test_idmixin.Test_IDMixin.test_getattr_with_parameter_attr ... ok > unittests.test_idmixin.Test_IDMixin.test_getattr_with_parent_not_set ... ok > unittests.test_idmixin.Test_IDMixin.test_inject ... ok > unittests.test_idmixin.Test_IDMixin.test_is_standard_cell ... ok > unittests.test_idmixin.Test_IDMixin.test_local_property ... ok > unittests.test_idmixin.Test_IDMixin.test_position_property ... ok > unittests.test_idmixin.Test_IDMixin.test_set_initial_value ... ok > unittests.test_idmixin.Test_IDMixin.test_set_parameters ... ok > unittests.test_idmixin.Test_IDMixin.test_setattr_with_parameter_attr ... ok > unittests.test_lowlevelapi.test_build_create ... ok > unittests.test_lowlevelapi.test_build_connect ... ok > unittests.test_lowlevelapi.test_set ... ok > unittests.test_lowlevelapi.test_build_record ... ok > unittests.test_lowlevelapi.test_build_record_with_assembly ... ok > unittests.test_population.test_create_population_standard_cell_simple ... ok > unittests.test_population.test_create_population_standard_cell_with_params > ... ok > unittests.test_population.test_create_population_with_implicit_grid ... ok > unittests.test_population.test_cell_property ... > /«PKGBUILDDIR»/build/lib.linux-x86_64-2.7/pyNN/common.py:915: UserWarning: > The `Population.cell` attribute is not an official part of the > API, and its use is deprecated. It will be removed in a future > release. All uses of `cell` may be replaced by `all_cells` > release. All uses of `cell` may be replaced by `all_cells`") > ok > unittests.test_population.test_id_to_index ... ok > unittests.test_population.test_id_to_index_with_array ... ok > unittests.test_population.test_id_to_index_with_populationview ... ok > unittests.test_population.test_id_to_index_with_invalid_id ... ok > unittests.test_population.test_id_to_index_with_invalid_ids ... ok > unittests.test_population.test_id_to_local_index ... ok > unittests.test_population.test_id_to_local_index_with_invalid_id ... ok > unittests.test_population.test_set_structure ... ok > unittests.test_population.test_get_positions ... ok > unittests.test_population.test_set_positions ... ok > unittests.test_population.test_position_generator ... ok > unittests.test_population.test_describe ... ok > unittests.test_populationview.test_create_with_boolean_array_selector ... ok > unittests.test_populationview.test_create_with_index_array_selector ... ok > unittests.test_populationview.test_create_with_slice_selector ... ok > unittests.test_populationview.test_structure_property ... ok > unittests.test_populationview.test_get_positions ... ok > unittests.test_populationview.test_id_to_index ... ok > unittests.test_populationview.test_describe ... ok > unittests.test_projection.test_create_simple ... ok > unittests.test_projection.test_create_with_synapse_dynamics ... ok > unittests.test_projection.test_len ... ok > unittests.test_projection.test_size_no_gather ... ok > unittests.test_projection.test_size_with_gather ... ok > unittests.test_projection.test__getitem ... ok > unittests.test_projection.test_set_weights ... ok > unittests.test_projection.test_randomize_weights ... ok > unittests.test_projection.test_set_delays ... ok > unittests.test_projection.test_randomize_delays ... ok > unittests.test_projection.test_set_synapse_dynamics_param ... ok > unittests.test_projection.test_get_weights ... ok > unittests.test_projection.test_get_delays ... ok > unittests.test_projection.test_save_connections ... ok > unittests.test_projection.test_print_weights_as_list ... ok > unittests.test_projection.test_print_weights_as_array ... ok > unittests.test_projection.test_weight_histogram_with_args ... ok > unittests.test_projection.test_weight_histogram_no_args ... ok > unittests.test_projection.test_describe ... ok > test_create (unittests.test_random.NativeRNGTests) ... ok > test_parallel_safe_with_mask_local (unittests.test_random.ParallelTests) ... > ok > test_parallel_safe_with_mask_local_False > (unittests.test_random.ParallelTests) ... ok > test_parallel_safe_with_mask_local_None (unittests.test_random.ParallelTests) > ... ok > test_parallel_unsafe (unittests.test_random.ParallelTests) ... ok > test_permutation (unittests.test_random.ParallelTests) ... ok > test_boundaries (unittests.test_random.RandomDistributionTests) ... ok > test_gamma (unittests.test_random.RandomDistributionTests) ... ok > test_gaussian (unittests.test_random.RandomDistributionTests) ... ok > test_uniform (unittests.test_random.RandomDistributionTests) ... ok > Calling next(0) should return an empty array. ... ok > Calling next() with no arguments or with n=1 should return a float. ... ok > Calling next(n=m) where m > 1 should return an array. ... ok > Calling next(m) where m < 0 should raise a ValueError. ... ok > test_invalid_seed (unittests.test_random.SimpleTests) ... ok > unittests.test_recording.test_Recorder_create ... ok > unittests.test_recording.test_Recorder_invalid_variable ... ok > unittests.test_recording.test_record ... ok > unittests.test_recording.test_filter_recorded ... ok > unittests.test_recording.test_get__zero_offset ... ok > unittests.test_recording.test_write__with_filename__compatible_output__gather__onroot > ... ok > unittests.test_recording.test_metadata_property ... ok > unittests.test_recording.test__make_compatible_spikes ... ok > unittests.test_recording.test__make_compatible_v ... ok > unittests.test_simulation_control.test_setup ... ok > unittests.test_simulation_control.test_end ... ok > unittests.test_simulation_control.test_run ... ok > unittests.test_simulation_control.test_reset ... ok > unittests.test_simulation_control.test_initialize ... ok > unittests.test_simulation_control.test_current_time ... ok > unittests.test_simulation_control.test_time_step ... ok > unittests.test_simulation_control.test_min_delay ... ok > unittests.test_simulation_control.test_max_delay ... ok > unittests.test_simulation_control.test_num_processes ... ok > unittests.test_simulation_control.test_rank ... ok > unittests.test_space.Grid2D_Test.test_calculate_size ... ok > unittests.test_space.Grid2D_Test.test_generate_positions ... ok > unittests.test_space.Grid3D_Test.test_calculate_size ... ok > unittests.test_space.Grid3D_Test.test_generate_positions ... ok > test__eq__ (unittests.test_space.LineTest) ... ok > test_generate_positions (unittests.test_space.LineTest) ... ok > test_generate_positions_default_parameters (unittests.test_space.LineTest) > ... ok > test_get_parameters (unittests.test_space.LineTest) ... ok > test_cylindrical_space (unittests.test_space.SpaceTest) ... ok > test_generator_for_infinite_space_with_3D_distances > (unittests.test_space.SpaceTest) ... ok > test_infinite_space_with_3D_distances (unittests.test_space.SpaceTest) ... ok > test_infinite_space_with_collapsed_axes (unittests.test_space.SpaceTest) ... > ok > test_infinite_space_with_scale_and_offset (unittests.test_space.SpaceTest) > ... ok > unittests.test_space.TestCuboid.test_sample ... ok > unittests.test_space.TestRandomStructure.test_generate_positions ... ok > unittests.test_space.TestSphere.test__create ... ok > unittests.test_space.TestSphere.test_sample ... ok > unittests.test_space.test_distance ... ok > unittests.test_standardmodels.test_build_translations ... ok > unittests.test_standardmodels.test_has_parameter ... ok > unittests.test_standardmodels.test_get_parameter_names ... ok > Instantiating a StandardModelType should set self.parameters to the value ... > ok > unittests.test_standardmodels.test_checkParameters_without_defaults ... ok > unittests.test_standardmodels.test_checkParameters_with_defaults ... ok > unittests.test_standardmodels.test_checkParameters_with_nonexistent_parameter > ... ok > unittests.test_standardmodels.test_checkParameters_with_invalid_value ... ok > unittests.test_standardmodels.test_translate ... ok > unittests.test_standardmodels.test_translate_with_invalid_transformation ... > ok > unittests.test_standardmodels.test_translate_with_divide_by_zero_error ... ok > unittests.test_standardmodels.test_reverse_translate ... ok > unittests.test_standardmodels.test_reverse_translate_with_invalid_transformation > ... ok > unittests.test_standardmodels.test_simple_parameters ... ok > unittests.test_standardmodels.test_scaled_parameters ... ok > unittests.test_standardmodels.test_computed_parameters ... ok > update_parameters(P) should update self.parameters with the value of ... ok > unittests.test_standardmodels.test_describe ... ok > unittests.test_standardmodels.test_describe_SD ... ok > unittests.test_standardmodels.test_STDPMechanism_create ... ok > unittests.test_standardmodels.test_STDPMechanism_create_invalid_types ... ok > unittests.test_utility_functions.test_is_conductance ... ok > unittests.test_utility_functions.test_is_conductance_with_nonlocal_cell ... ok > unittests.test_utility_functions.test_check_weight_with_scalar ... ok > unittests.test_utility_functions.test_check_weight_with_list ... ok > unittests.test_utility_functions.test_check_weight_with_NaN ... ok > unittests.test_utility_functions.test_check_weight_with_invalid_value ... ok > unittests.test_utility_functions.test_check_weight_is_conductance_is_None ... > ok > unittests.test_utility_functions.test_check_delay ... ok > > ====================================================================== > ERROR: unittests.test_files.test_NumpyBinaryFile > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest > self.test(*self.arg) > File "/«PKGBUILDDIR»/test/unittests/test_files.py", line 92, in > test_NumpyBinaryFile > assert_equal(nbf.get_metadata(), metadata) > File "/«PKGBUILDDIR»/build/lib.linux-x86_64-2.7/pyNN/recording/files.py", > line 216, in get_metadata > self.fileobj.seek(0) > ValueError: I/O operation on closed file > > ====================================================================== > FAIL: unittests.test_basepopulation.test_get_with_no_get_array > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest > self.test(*self.arg) > File "/«PKGBUILDDIR»/test/unittests/test_basepopulation.py", line 172, in > test_get_with_no_get_array > assert_equal(values[0]._name, "i_offset") > AssertionError: <Mock name='mock.i_offset._name' id='32256336'> != 'i_offset' > > ---------------------------------------------------------------------- > Ran 294 tests in 0.529s > > FAILED (SKIP=6, errors=1, failures=1) > make[1]: *** [override_dh_auto_test] Error 1 The full build log is available from: http://people.debian.org/~lucas/logs/2012/08/14/pynn_0.7.2-1_wheezy.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures. -- To UNSUBSCRIBE, email to debian-bugs-rc-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
