Hi, the attached patch solves the issue. Not tagging patch or intend to NMU however, as I think it should be further investigated why it fails (it does not build the libs anymore when building "mdrun" target only).
Regards Evgeni -- Bruce Schneier can read and understand Perl programs.
diff -Nru gromacs-4.5.5/debian/changelog gromacs-4.5.5/debian/changelog --- gromacs-4.5.5/debian/changelog 2012-06-09 20:43:07.000000000 +0200 +++ gromacs-4.5.5/debian/changelog 2012-07-10 11:41:52.000000000 +0200 @@ -1,3 +1,9 @@ +gromacs (4.5.5-2.1) UNRELEASED; urgency=low + + * Non-maintainer upload. + + -- Evgeni Golov <evg...@debian.org> Tue, 10 Jul 2012 11:41:49 +0200 + gromacs (4.5.5-2) unstable; urgency=low [ Andreas Tille ] diff -Nru gromacs-4.5.5/debian/rules gromacs-4.5.5/debian/rules --- gromacs-4.5.5/debian/rules 2012-06-08 04:21:18.000000000 +0200 +++ gromacs-4.5.5/debian/rules 2012-07-10 13:15:08.000000000 +0200 @@ -102,8 +102,8 @@ build-mpich: configure-stamp dh_testdir - $(MAKE) -C build/mpich mdrun - $(MAKE) -C build/mpich-dp mdrun + $(MAKE) -C build/mpich + $(MAKE) -C build/mpich-dp sed -e 's/#MPIABBR#/mpich/g' -e 's/#MPIPROG#/MPICH2/g' \ < debian/gromacs-parallel.README.Debian.in \ > debian/gromacs-mpich.README.Debian @@ -112,8 +112,8 @@ build-openmpi: configure-stamp dh_testdir ifneq (,$(findstring $(DEB_HOST_ARCH),$(OPENMPI_ARCH))) - $(MAKE) -C build/openmpi mdrun - $(MAKE) -C build/openmpi-dp mdrun + $(MAKE) -C build/openmpi + $(MAKE) -C build/openmpi-dp sed -e 's/#MPIABBR#/openmpi/g' -e 's/#MPIPROG#/OpenMPI/g' \ < debian/gromacs-parallel.README.Debian.in \ > debian/gromacs-openmpi.README.Debian @@ -204,8 +204,8 @@ dh_testroot dh_prep -pgromacs-mpich dh_installdirs -pgromacs-mpich - $(MAKE) -C build/mpich install-mdrun DESTDIR=$(CURDIR)/debian/gromacs-mpich - $(MAKE) -C build/mpich-dp install-mdrun DESTDIR=$(CURDIR)/debian/gromacs-mpich + $(MAKE) -C build/mpich install DESTDIR=$(CURDIR)/debian/gromacs-mpich + $(MAKE) -C build/mpich-dp install DESTDIR=$(CURDIR)/debian/gromacs-mpich dh_installman -pgromacs-mpich debian/man/mdrun_mpi.mpich.1 dh_link -pgromacs-mpich usr/share/man/man1/mdrun_mpi.mpich.1.gz usr/share/man/man1/mdrun_mpi_d.mpich.1.gz dh_lintian -pgromacs-mpich @@ -216,8 +216,8 @@ dh_prep -pgromacs-openmpi ifneq (,$(findstring $(DEB_HOST_ARCH),$(OPENMPI_ARCH))) dh_installdirs -pgromacs-openmpi - $(MAKE) -C build/openmpi install-mdrun DESTDIR=$(CURDIR)/debian/gromacs-openmpi - $(MAKE) -C build/openmpi-dp install-mdrun DESTDIR=$(CURDIR)/debian/gromacs-openmpi + $(MAKE) -C build/openmpi install DESTDIR=$(CURDIR)/debian/gromacs-openmpi + $(MAKE) -C build/openmpi-dp install DESTDIR=$(CURDIR)/debian/gromacs-openmpi dh_installman -pgromacs-openmpi debian/man/mdrun_mpi.openmpi.1 dh_link -pgromacs-openmpi usr/share/man/man1/mdrun_mpi.openmpi.1.gz usr/share/man/man1/mdrun_mpi_d.openmpi.1.gz dh_lintian -pgromacs-openmpi
