Hi,As specified in the description and the documentation, libatlas3gf-base is just provided <http://bugs.debian.org/cgi-bin/pkgreport.cgi?package=libatlas3gf-base> as a convenient and easy way to install atlas. The right way is to rebuild locally the package.
See README.Debian
It is an upstream bug and should be fixed with the release 3.9. Sylvestre <http://bugs.debian.org/cgi-bin/pkgreport.cgi?package=libatlas3gf-base>