Source: ruby-bio Version: 1.4.2-2 Severity: serious Tags: wheezy sid User: debian...@lists.debian.org Usertags: qa-ftbfs-20120524 qa-ftbfs Justification: FTBFS on amd64
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part: > make[1]: Entering directory `/«PKGBUILDDIR»' > dh_auto_install > Entering dh_ruby --install > install -d /«PKGBUILDDIR»/debian/ruby-bio/usr/bin > install -D -m755 bin/br_bioflat.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/bin/br_bioflat.rb > install -D -m755 bin/bioruby /«PKGBUILDDIR»/debian/ruby-bio/usr/bin/bioruby > install -D -m755 bin/br_biogetseq.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/bin/br_biogetseq.rb > install -D -m755 bin/br_biofetch.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/bin/br_biofetch.rb > install -D -m755 bin/br_pmfetch.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/bin/br_pmfetch.rb > install -d /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby > install -D -m644 lib/bio/shell/object.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/object.rb > install -D -m644 lib/bio/shell/irb.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/irb.rb > install -D -m644 lib/bio/shell/setup.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/setup.rb > install -D -m644 lib/bio/shell/web.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/web.rb > install -D -m644 lib/bio/shell/interface.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/interface.rb > install -D -m644 lib/bio/shell/core.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/core.rb > install -D -m644 > lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_methods.rhtml > > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_methods.rhtml > install -D -m644 > lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_modules.rhtml > > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_modules.rhtml > install -D -m644 > lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_controller.rb > > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_controller.rb > install -D -m644 > lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-link.gif > > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-link.gif > install -D -m644 > lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby.rhtml > > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby.rhtml > install -D -m644 > lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/commands.rhtml > > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/commands.rhtml > install -D -m644 > lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/history.rhtml > > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/history.rhtml > install -D -m644 > lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_classes.rhtml > > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_classes.rhtml > install -D -m644 > lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/spinner.gif > > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/spinner.gif > install -D -m644 > lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_helper.rb > > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_helper.rb > install -D -m644 > lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/index.rhtml > > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/index.rhtml > install -D -m644 > lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby.css > > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby.css > install -D -m644 > lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_log.rhtml > > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_log.rhtml > install -D -m644 > lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_variables.rhtml > > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_variables.rhtml > install -D -m644 > lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-bg.gif > > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-bg.gif > install -D -m644 > lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-gem.png > > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-gem.png > install -D -m644 > lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/bioruby_generator.rb > > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/bioruby_generator.rb > install -D -m644 lib/bio/shell/plugin/entry.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/entry.rb > install -D -m644 lib/bio/shell/plugin/das.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/das.rb > install -D -m644 lib/bio/shell/plugin/flatfile.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/flatfile.rb > install -D -m644 lib/bio/shell/plugin/seq.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/seq.rb > install -D -m644 lib/bio/shell/plugin/togows.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/togows.rb > install -D -m644 lib/bio/shell/plugin/obda.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/obda.rb > install -D -m644 lib/bio/shell/plugin/midi.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/midi.rb > install -D -m644 lib/bio/shell/plugin/ncbirest.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/ncbirest.rb > install -D -m644 lib/bio/shell/plugin/codon.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/codon.rb > install -D -m644 lib/bio/shell/plugin/soap.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/soap.rb > install -D -m644 lib/bio/shell/plugin/emboss.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/emboss.rb > install -D -m644 lib/bio/shell/plugin/blast.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/blast.rb > install -D -m644 lib/bio/shell/plugin/keggapi.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/keggapi.rb > install -D -m644 lib/bio/shell/plugin/psort.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/psort.rb > install -D -m644 lib/bio/shell/demo.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/demo.rb > install -D -m644 lib/bio/shell/script.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/script.rb > install -D -m644 lib/bio/appl/paml/codeml.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/codeml.rb > install -D -m644 lib/bio/appl/paml/common_report.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/common_report.rb > install -D -m644 lib/bio/appl/paml/codeml/report.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/codeml/report.rb > install -D -m644 lib/bio/appl/paml/codeml/rates.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/codeml/rates.rb > install -D -m644 lib/bio/appl/paml/yn00.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/yn00.rb > install -D -m644 lib/bio/appl/paml/baseml/report.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/baseml/report.rb > install -D -m644 lib/bio/appl/paml/yn00/report.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/yn00/report.rb > install -D -m644 lib/bio/appl/paml/common.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/common.rb > install -D -m644 lib/bio/appl/paml/baseml.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/baseml.rb > install -D -m644 lib/bio/appl/meme/mast/report.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/meme/mast/report.rb > install -D -m644 lib/bio/appl/meme/mast.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/meme/mast.rb > install -D -m644 lib/bio/appl/meme/motif.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/meme/motif.rb > install -D -m644 lib/bio/appl/mafft/report.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/mafft/report.rb > install -D -m644 lib/bio/appl/probcons.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/probcons.rb > install -D -m644 lib/bio/appl/blat/report.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blat/report.rb > install -D -m644 lib/bio/appl/blast/ncbioptions.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/ncbioptions.rb > install -D -m644 lib/bio/appl/blast/remote.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/remote.rb > install -D -m644 lib/bio/appl/blast/wublast.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/wublast.rb > install -D -m644 lib/bio/appl/blast/rexml.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/rexml.rb > install -D -m644 lib/bio/appl/blast/format8.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/format8.rb > install -D -m644 lib/bio/appl/blast/report.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/report.rb > install -D -m644 lib/bio/appl/blast/ddbj.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/ddbj.rb > install -D -m644 lib/bio/appl/blast/format0.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/format0.rb > install -D -m644 lib/bio/appl/blast/xmlparser.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/xmlparser.rb > install -D -m644 lib/bio/appl/blast/genomenet.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/genomenet.rb > install -D -m644 lib/bio/appl/blast/rpsblast.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/rpsblast.rb > install -D -m644 lib/bio/appl/fasta.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/fasta.rb > install -D -m644 lib/bio/appl/fasta/format10.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/fasta/format10.rb > install -D -m644 lib/bio/appl/clustalw.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/clustalw.rb > install -D -m644 lib/bio/appl/sim4.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/sim4.rb > install -D -m644 lib/bio/appl/tmhmm/report.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/tmhmm/report.rb > install -D -m644 lib/bio/appl/muscle.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/muscle.rb > install -D -m644 lib/bio/appl/tcoffee.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/tcoffee.rb > install -D -m644 lib/bio/appl/targetp/report.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/targetp/report.rb > install -D -m644 lib/bio/appl/psort/report.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/psort/report.rb > install -D -m644 lib/bio/appl/genscan/report.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/genscan/report.rb > install -D -m644 lib/bio/appl/iprscan/report.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/iprscan/report.rb > install -D -m644 lib/bio/appl/clustalw/report.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/clustalw/report.rb > install -D -m644 lib/bio/appl/spidey/report.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/spidey/report.rb > install -D -m644 lib/bio/appl/mafft.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/mafft.rb > install -D -m644 lib/bio/appl/hmmer/report.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/hmmer/report.rb > install -D -m644 lib/bio/appl/bl2seq/report.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/bl2seq/report.rb > install -D -m644 lib/bio/appl/gcg/seq.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/gcg/seq.rb > install -D -m644 lib/bio/appl/gcg/msf.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/gcg/msf.rb > install -D -m644 lib/bio/appl/emboss.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/emboss.rb > install -D -m644 lib/bio/appl/phylip/distance_matrix.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/phylip/distance_matrix.rb > install -D -m644 lib/bio/appl/phylip/alignment.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/phylip/alignment.rb > install -D -m644 lib/bio/appl/blast.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast.rb > install -D -m644 lib/bio/appl/sim4/report.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/sim4/report.rb > install -D -m644 lib/bio/appl/pts1.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/pts1.rb > install -D -m644 lib/bio/appl/hmmer.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/hmmer.rb > install -D -m644 lib/bio/appl/psort.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/psort.rb > install -D -m644 lib/bio/appl/sosui/report.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/sosui/report.rb > install -D -m644 lib/bio/reference.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/reference.rb > install -D -m644 lib/bio/shell.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell.rb > install -D -m644 lib/bio/pathway.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/pathway.rb > install -D -m644 lib/bio/data/codontable.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/data/codontable.rb > install -D -m644 lib/bio/data/aa.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/data/aa.rb > install -D -m644 lib/bio/data/na.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/data/na.rb > install -D -m644 > lib/bio/db/sanger_chromatogram/chromatogram_to_biosequence.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/sanger_chromatogram/chromatogram_to_biosequence.rb > install -D -m644 lib/bio/db/sanger_chromatogram/scf.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/sanger_chromatogram/scf.rb > install -D -m644 lib/bio/db/sanger_chromatogram/chromatogram.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/sanger_chromatogram/chromatogram.rb > install -D -m644 lib/bio/db/sanger_chromatogram/abif.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/sanger_chromatogram/abif.rb > install -D -m644 lib/bio/db/nexus.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/nexus.rb > install -D -m644 lib/bio/db/aaindex.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/aaindex.rb > install -D -m644 lib/bio/db/phyloxml/phyloxml_writer.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/phyloxml/phyloxml_writer.rb > install -D -m644 lib/bio/db/phyloxml/phyloxml_parser.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/phyloxml/phyloxml_parser.rb > install -D -m644 lib/bio/db/phyloxml/phyloxml.xsd > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/phyloxml/phyloxml.xsd > install -D -m644 lib/bio/db/phyloxml/phyloxml_elements.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/phyloxml/phyloxml_elements.rb > install -D -m644 lib/bio/db/litdb.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/litdb.rb > install -D -m644 lib/bio/db/lasergene.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/lasergene.rb > install -D -m644 lib/bio/db/kegg/drug.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/drug.rb > install -D -m644 lib/bio/db/kegg/expression.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/expression.rb > install -D -m644 lib/bio/db/kegg/compound.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/compound.rb > install -D -m644 lib/bio/db/kegg/brite.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/brite.rb > install -D -m644 lib/bio/db/kegg/pathway.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/pathway.rb > install -D -m644 lib/bio/db/kegg/keggtab.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/keggtab.rb > install -D -m644 lib/bio/db/kegg/glycan.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/glycan.rb > install -D -m644 lib/bio/db/kegg/enzyme.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/enzyme.rb > install -D -m644 lib/bio/db/kegg/kgml.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/kgml.rb > install -D -m644 lib/bio/db/kegg/genome.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/genome.rb > install -D -m644 lib/bio/db/kegg/genes.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/genes.rb > install -D -m644 lib/bio/db/kegg/module.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/module.rb > install -D -m644 lib/bio/db/kegg/taxonomy.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/taxonomy.rb > install -D -m644 lib/bio/db/kegg/orthology.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/orthology.rb > install -D -m644 lib/bio/db/kegg/reaction.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/reaction.rb > install -D -m644 lib/bio/db/kegg/common.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/common.rb > install -D -m644 lib/bio/db/transfac.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/transfac.rb > install -D -m644 lib/bio/db/biosql/sequence.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/biosql/sequence.rb > install -D -m644 lib/bio/db/biosql/biosql_to_biosequence.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/biosql/biosql_to_biosequence.rb > install -D -m644 lib/bio/db/gff.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/gff.rb > install -D -m644 lib/bio/db/go.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/go.rb > install -D -m644 lib/bio/db/fasta.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fasta.rb > install -D -m644 lib/bio/db/fasta/format_qual.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fasta/format_qual.rb > install -D -m644 lib/bio/db/fasta/format_fasta.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fasta/format_fasta.rb > install -D -m644 lib/bio/db/fasta/defline.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fasta/defline.rb > install -D -m644 lib/bio/db/fasta/qual_to_biosequence.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fasta/qual_to_biosequence.rb > install -D -m644 lib/bio/db/fasta/qual.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fasta/qual.rb > install -D -m644 lib/bio/db/fasta/fasta_to_biosequence.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fasta/fasta_to_biosequence.rb > install -D -m644 lib/bio/db/newick.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/newick.rb > install -D -m644 lib/bio/db/pdb.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb.rb > install -D -m644 lib/bio/db/genbank/genbank_to_biosequence.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/genbank_to_biosequence.rb > install -D -m644 lib/bio/db/genbank/refseq.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/refseq.rb > install -D -m644 lib/bio/db/genbank/genbank.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/genbank.rb > install -D -m644 lib/bio/db/genbank/ddbj.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/ddbj.rb > install -D -m644 lib/bio/db/genbank/common.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/common.rb > install -D -m644 lib/bio/db/genbank/genpept.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/genpept.rb > install -D -m644 lib/bio/db/genbank/format_genbank.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/format_genbank.rb > install -D -m644 lib/bio/db/fantom.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fantom.rb > install -D -m644 lib/bio/db/soft.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/soft.rb > install -D -m644 lib/bio/db/embl/swissprot.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/swissprot.rb > install -D -m644 lib/bio/db/embl/embl_to_biosequence.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/embl_to_biosequence.rb > install -D -m644 lib/bio/db/embl/common.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/common.rb > install -D -m644 lib/bio/db/embl/embl.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/embl.rb > install -D -m644 lib/bio/db/embl/format_embl.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/format_embl.rb > install -D -m644 lib/bio/db/embl/sptr.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/sptr.rb > install -D -m644 lib/bio/db/embl/uniprot.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/uniprot.rb > install -D -m644 lib/bio/db/embl/trembl.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/trembl.rb > install -D -m644 lib/bio/db/medline.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/medline.rb > install -D -m644 lib/bio/db/fastq.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fastq.rb > install -D -m644 lib/bio/db/prosite.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/prosite.rb > install -D -m644 lib/bio/db/fastq/format_fastq.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fastq/format_fastq.rb > install -D -m644 lib/bio/db/fastq/fastq_to_biosequence.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fastq/fastq_to_biosequence.rb > install -D -m644 lib/bio/db/nbrf.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/nbrf.rb > install -D -m644 lib/bio/db/pdb/chemicalcomponent.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/chemicalcomponent.rb > install -D -m644 lib/bio/db/pdb/chain.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/chain.rb > install -D -m644 lib/bio/db/pdb/pdb.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/pdb.rb > install -D -m644 lib/bio/db/pdb/atom.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/atom.rb > install -D -m644 lib/bio/db/pdb/utils.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/utils.rb > install -D -m644 lib/bio/db/pdb/residue.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/residue.rb > install -D -m644 lib/bio/db/pdb/model.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/model.rb > install -D -m644 lib/bio/db/rebase.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/rebase.rb > install -D -m644 lib/bio/map.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/map.rb > install -D -m644 lib/bio/io/fastacmd.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/fastacmd.rb > install -D -m644 lib/bio/io/dbget.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/dbget.rb > install -D -m644 lib/bio/io/biosql/ar-biosql.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/biosql/ar-biosql.rb > install -D -m644 lib/bio/io/biosql/biosql.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/biosql/biosql.rb > install -D -m644 lib/bio/io/biosql/config/database.yml > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/biosql/config/database.yml > install -D -m644 lib/bio/io/ddbjxml.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/ddbjxml.rb > install -D -m644 lib/bio/io/das.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/das.rb > install -D -m644 lib/bio/io/hinv.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/hinv.rb > install -D -m644 lib/bio/io/flatfile.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/flatfile.rb > install -D -m644 lib/bio/io/flatfile/index.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/flatfile/index.rb > install -D -m644 lib/bio/io/flatfile/autodetection.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/flatfile/autodetection.rb > install -D -m644 lib/bio/io/flatfile/buffer.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/flatfile/buffer.rb > install -D -m644 lib/bio/io/flatfile/splitter.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/flatfile/splitter.rb > install -D -m644 lib/bio/io/flatfile/indexer.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/flatfile/indexer.rb > install -D -m644 lib/bio/io/flatfile/bdb.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/flatfile/bdb.rb > install -D -m644 lib/bio/io/ebisoap.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/ebisoap.rb > install -D -m644 lib/bio/io/ddbjrest.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/ddbjrest.rb > install -D -m644 lib/bio/io/registry.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/registry.rb > install -D -m644 lib/bio/io/togows.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/togows.rb > install -D -m644 lib/bio/io/fetch.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/fetch.rb > install -D -m644 lib/bio/io/sql.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/sql.rb > install -D -m644 lib/bio/io/ncbisoap.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/ncbisoap.rb > install -D -m644 lib/bio/io/ncbirest.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/ncbirest.rb > install -D -m644 lib/bio/io/soapwsdl.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/soapwsdl.rb > install -D -m644 lib/bio/io/ensembl.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/ensembl.rb > install -D -m644 lib/bio/io/higet.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/higet.rb > install -D -m644 lib/bio/io/pubmed.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/pubmed.rb > install -D -m644 lib/bio/io/keggapi.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/keggapi.rb > install -D -m644 lib/bio/sequence.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence.rb > install -D -m644 lib/bio/db.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db.rb > install -D -m644 lib/bio/alignment.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/alignment.rb > install -D -m644 lib/bio/location.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/location.rb > install -D -m644 lib/bio/tree.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/tree.rb > install -D -m644 lib/bio/feature.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/feature.rb > install -D -m644 lib/bio/sequence/sequence_masker.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/sequence_masker.rb > install -D -m644 lib/bio/sequence/format.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/format.rb > install -D -m644 lib/bio/sequence/generic.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/generic.rb > install -D -m644 lib/bio/sequence/compat.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/compat.rb > install -D -m644 lib/bio/sequence/adapter.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/adapter.rb > install -D -m644 lib/bio/sequence/quality_score.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/quality_score.rb > install -D -m644 lib/bio/sequence/aa.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/aa.rb > install -D -m644 lib/bio/sequence/common.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/common.rb > install -D -m644 lib/bio/sequence/dblink.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/dblink.rb > install -D -m644 lib/bio/sequence/na.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/na.rb > install -D -m644 lib/bio/sequence/format_raw.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/format_raw.rb > install -D -m644 lib/bio/version.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/version.rb > install -D -m644 lib/bio/command.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/command.rb > install -D -m644 lib/bio/util/restriction_enzyme/double_stranded.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded.rb > install -D -m644 lib/bio/util/restriction_enzyme/single_strand_complement.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/single_strand_complement.rb > install -D -m644 lib/bio/util/restriction_enzyme/cut_symbol.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/cut_symbol.rb > install -D -m644 lib/bio/util/restriction_enzyme/sorted_num_array.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/sorted_num_array.rb > install -D -m644 lib/bio/util/restriction_enzyme/analysis_basic.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/analysis_basic.rb > install -D -m644 lib/bio/util/restriction_enzyme/analysis.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/analysis.rb > install -D -m644 lib/bio/util/restriction_enzyme/dense_int_array.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/dense_int_array.rb > install -D -m644 > lib/bio/util/restriction_enzyme/double_stranded/aligned_strands.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded/aligned_strands.rb > install -D -m644 > lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded/cut_location_pair.rb > install -D -m644 > lib/bio/util/restriction_enzyme/double_stranded/cut_locations_in_enzyme_notation.rb > > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded/cut_locations_in_enzyme_notation.rb > install -D -m644 > lib/bio/util/restriction_enzyme/double_stranded/cut_locations.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded/cut_locations.rb > install -D -m644 > lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair_in_enzyme_notation.rb > > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded/cut_location_pair_in_enzyme_notation.rb > install -D -m644 > lib/bio/util/restriction_enzyme/single_strand/cut_locations_in_enzyme_notation.rb > > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/single_strand/cut_locations_in_enzyme_notation.rb > install -D -m644 lib/bio/util/restriction_enzyme/single_strand.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/single_strand.rb > install -D -m644 > lib/bio/util/restriction_enzyme/range/sequence_range/fragment.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/sequence_range/fragment.rb > install -D -m644 > lib/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb > install -D -m644 > lib/bio/util/restriction_enzyme/range/sequence_range/fragments.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/sequence_range/fragments.rb > install -D -m644 lib/bio/util/restriction_enzyme/range/cut_range.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/cut_range.rb > install -D -m644 lib/bio/util/restriction_enzyme/range/sequence_range.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/sequence_range.rb > install -D -m644 > lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/horizontal_cut_range.rb > install -D -m644 lib/bio/util/restriction_enzyme/range/cut_ranges.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/cut_ranges.rb > install -D -m644 lib/bio/util/restriction_enzyme/range/vertical_cut_range.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/vertical_cut_range.rb > install -D -m644 lib/bio/util/restriction_enzyme/enzymes.yaml > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/enzymes.yaml > install -D -m644 lib/bio/util/restriction_enzyme/string_formatting.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/string_formatting.rb > install -D -m644 lib/bio/util/restriction_enzyme.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme.rb > install -D -m644 lib/bio/util/sirna.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/sirna.rb > install -D -m644 lib/bio/util/contingency_table.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/contingency_table.rb > install -D -m644 lib/bio/util/color_scheme.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme.rb > install -D -m644 lib/bio/util/color_scheme/zappo.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/zappo.rb > install -D -m644 lib/bio/util/color_scheme/nucleotide.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/nucleotide.rb > install -D -m644 lib/bio/util/color_scheme/taylor.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/taylor.rb > install -D -m644 lib/bio/util/color_scheme/turn.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/turn.rb > install -D -m644 lib/bio/util/color_scheme/strand.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/strand.rb > install -D -m644 lib/bio/util/color_scheme/helix.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/helix.rb > install -D -m644 lib/bio/util/color_scheme/hydropathy.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/hydropathy.rb > install -D -m644 lib/bio/util/color_scheme/buried.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/buried.rb > install -D -m644 lib/bio/compat/references.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/compat/references.rb > install -D -m644 lib/bio/compat/features.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/compat/features.rb > install -D -m644 lib/bio.rb > /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio.rb > Rewriting shebang line of /«PKGBUILDDIR»/debian/ruby-bio/usr/bin/br_pmfetch.rb > Rewriting shebang line of > /«PKGBUILDDIR»/debian/ruby-bio/usr/bin/br_biofetch.rb > Rewriting shebang line of > /«PKGBUILDDIR»/debian/ruby-bio/usr/bin/br_biogetseq.rb > Rewriting shebang line of /«PKGBUILDDIR»/debian/ruby-bio/usr/bin/bioruby > Rewriting shebang line of /«PKGBUILDDIR»/debian/ruby-bio/usr/bin/br_bioflat.rb > /usr/bin/ruby1.8 -I/usr/lib/ruby/vendor_ruby > /usr/lib/ruby/vendor_ruby/gem2deb/test_runner.rb > Loaded suite debian/ruby-tests > Started > .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................F................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... > Finished in 62.485849 seconds. > > 1) Failure: > test_dataset(Bio::TestSOFT) [./test/unit/bio/db/test_soft.rb:93]: > <["GDS100_8", > "GDS100_7", > "GDS100_6", > "GDS100_5", > "GDS100_4", > "GDS100_3", > "GDS100_2", > "GDS100_1"]> expected but was > <["GDS100_1", > "GDS100_2", > "GDS100_3", > "GDS100_4", > "GDS100_5", > "GDS100_6", > "GDS100_7", > "GDS100_8"]>. > > 3601 tests, 20925 assertions, 1 failures, 0 errors > ERROR: Test "ruby1.8" failed. Exiting. > dh_auto_install: dh_ruby --install /«PKGBUILDDIR»/debian/tmp returned exit > code 1 > make[1]: *** [override_dh_auto_install] Error 1 The full build log is available from: http://people.debian.org/~lucas/logs/2012/05/24/ruby-bio_1.4.2-2_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on about 50 AMD64 nodes of the Grid'5000 platform, using a clean chroot. Internet was not accessible from the build systems. -- To UNSUBSCRIBE, email to debian-bugs-rc-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
