Your message dated Mon, 21 May 2012 21:35:22 +0000 with message-id <e1swaga-00026q...@franck.debian.org> and subject line Bug#667214: fixed in jellyfish 1.1.5-1 has caused the Debian Bug report #667214, regarding jellyfish: ftbfs with GCC-4.7 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 667214: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=667214 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: jellyfish Version: 1.1.2-1 Severity: important Tags: sid wheezy User: debian-...@lists.debian.org Usertags: ftbfs-gcc-4.7 The package fails to build in a test rebuild on at least amd64 with gcc-4.7/g++-4.7, but succeeds to build with gcc-4.6/g++-4.6. The severity of this report may be raised before the wheezy release. parse_dna.cc:97:3: error: narrowing conversion of '-3' from 'int' to 'const uint_t {aka const long unsigned int}' inside { } is ill-formed in C++11 [-Werror=narrowing] The full build log can be found at: http://people.debian.org/~lucas/logs/2012/03/29-clang-gcc47/unstable-gcc47/jellyfish_1.1.2-1_unstable-gcc47.log The last lines of the build log are at the end of this report. Some hints on fixing these issues can be found at http://gcc.gnu.org/gcc-4.7/porting_to.html To build with GCC 4.7, either set CC=gcc-4.7 CXX=g++-4.7 explicitly, or install the gcc, g++, gfortran, ... packages from experimental. [...] parse_dna.cc:97:3: error: narrowing conversion of '-3' from 'int' to 'const uint_t {aka const long unsigned int}' inside { } is ill-formed in C++11 [-Werror=narrowing] parse_dna.cc:97:3: error: narrowing conversion of '-3' from 'int' to 'const uint_t {aka const long unsigned int}' inside { } is ill-formed in C++11 [-Werror=narrowing] parse_dna.cc:97:3: error: narrowing conversion of '-3' from 'int' to 'const uint_t {aka const long unsigned int}' inside { } is ill-formed in C++11 [-Werror=narrowing] parse_dna.cc:97:3: error: narrowing conversion of '-3' from 'int' to 'const uint_t {aka const long unsigned int}' inside { } is ill-formed in C++11 [-Werror=narrowing] parse_dna.cc:97:3: error: narrowing conversion of '-3' from 'int' to 'const uint_t {aka const long unsigned int}' inside { } is ill-formed in C++11 [-Werror=narrowing] parse_dna.cc:97:3: error: narrowing conversion of '-3' from 'int' to 'const uint_t {aka const long unsigned int}' inside { } is ill-formed in C++11 [-Werror=narrowing] parse_dna.cc:97:3: error: narrowing conversion of '-3' from 'int' to 'const uint_t {aka const long unsigned int}' inside { } is ill-formed in C++11 [-Werror=narrowing] parse_dna.cc:97:3: error: narrowing conversion of '-3' from 'int' to 'const uint_t {aka const long unsigned int}' inside { } is ill-formed in C++11 [-Werror=narrowing] parse_dna.cc:97:3: error: narrowing conversion of '-3' from 'int' to 'const uint_t {aka const long unsigned int}' inside { } is ill-formed in C++11 [-Werror=narrowing] parse_dna.cc:97:3: error: narrowing conversion of '-3' from 'int' to 'const uint_t {aka const long unsigned int}' inside { } is ill-formed in C++11 [-Werror=narrowing] parse_dna.cc:97:3: error: narrowing conversion of '-3' from 'int' to 'const uint_t {aka const long unsigned int}' inside { } is ill-formed in C++11 [-Werror=narrowing] parse_dna.cc:97:3: error: narrowing conversion of '-3' from 'int' to 'const uint_t {aka const long unsigned int}' inside { } is ill-formed in C++11 [-Werror=narrowing] parse_dna.cc:97:3: error: narrowing conversion of '-3' from 'int' to 'const uint_t {aka const long unsigned int}' inside { } is ill-formed in C++11 [-Werror=narrowing] parse_dna.cc:97:3: error: narrowing conversion of '-3' from 'int' to 'const uint_t {aka const long unsigned int}' inside { } is ill-formed in C++11 [-Werror=narrowing] parse_dna.cc:97:3: error: narrowing conversion of '-3' from 'int' to 'const uint_t {aka const long unsigned int}' inside { } is ill-formed in C++11 [-Werror=narrowing] parse_dna.cc:97:3: error: narrowing conversion of '-3' from 'int' to 'const uint_t {aka const long unsigned int}' inside { } is ill-formed in C++11 [-Werror=narrowing] parse_dna.cc:97:3: error: narrowing conversion of '-3' from 'int' to 'const uint_t {aka const long unsigned int}' inside { } is ill-formed in C++11 [-Werror=narrowing] parse_dna.cc:97:3: error: narrowing conversion of '-3' from 'int' to 'const uint_t {aka const long unsigned int}' inside { } is ill-formed in C++11 [-Werror=narrowing] parse_dna.cc:97:3: error: narrowing conversion of '-3' from 'int' to 'const uint_t {aka const long unsigned int}' inside { } is ill-formed in C++11 [-Werror=narrowing] parse_dna.cc:97:3: error: narrowing conversion of '-3' from 'int' to 'const uint_t {aka const long unsigned int}' inside { } is ill-formed in C++11 [-Werror=narrowing] cc1plus: all warnings being treated as errors make[3]: *** [libjellyfish_la-parse_dna.lo] Error 1 make[3]: Leaving directory `/«PKGBUILDDIR»/jellyfish' make[2]: *** [all-recursive] Error 1 make[1]: *** [all] Error 2 dh_auto_build: make -j1 returned exit code 2 make[2]: Leaving directory `/«PKGBUILDDIR»' make[1]: Leaving directory `/«PKGBUILDDIR»' make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2
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--- Begin Message ---Source: jellyfish Source-Version: 1.1.5-1 We believe that the bug you reported is fixed in the latest version of jellyfish, which is due to be installed in the Debian FTP archive: jellyfish_1.1.5-1.debian.tar.gz to main/j/jellyfish/jellyfish_1.1.5-1.debian.tar.gz jellyfish_1.1.5-1.dsc to main/j/jellyfish/jellyfish_1.1.5-1.dsc jellyfish_1.1.5-1_amd64.deb to main/j/jellyfish/jellyfish_1.1.5-1_amd64.deb jellyfish_1.1.5.orig.tar.gz to main/j/jellyfish/jellyfish_1.1.5.orig.tar.gz A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 667...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated jellyfish package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Format: 1.8 Date: Mon, 21 May 2012 21:56:38 +0200 Source: jellyfish Binary: jellyfish Architecture: source amd64 Version: 1.1.5-1 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: jellyfish - count k-mers in DNA sequences Closes: 667214 Changes: jellyfish (1.1.5-1) unstable; urgency=low . * New upstream version fixing the FTBFS with gcc-4.7 bug Closes: #667214 * debian/patches/fix-unused-but-set-variable.patch: Removed because applied upstream Checksums-Sha1: 75cc2b8f4a18b72db53f02532d9b5fbec60825e5 1359 jellyfish_1.1.5-1.dsc f545c5708571c6a40171410d8e362ddda1846fc7 1032465 jellyfish_1.1.5.orig.tar.gz 47111c5601df38c629179d599be381efc41200f4 3064 jellyfish_1.1.5-1.debian.tar.gz 55df2a41918278db237467284a25f90795337a16 411816 jellyfish_1.1.5-1_amd64.deb Checksums-Sha256: 10c556a83c2ed46970944c56a5415bc41194db19342f7b16304d721d022627f8 1359 jellyfish_1.1.5-1.dsc adb3b8be084df0ad5894a96c2778bd3740868b3b51f3ed8b9377394f3761f74f 1032465 jellyfish_1.1.5.orig.tar.gz d5dd41fdbba8a301d5006500b55c1d3efc25341796b07c42fd6ab757ba5f1c43 3064 jellyfish_1.1.5-1.debian.tar.gz 9e1c289c09b1025e1ed76b83d71f45ab171347b9eab27e5c9a01be72ef2edb22 411816 jellyfish_1.1.5-1_amd64.deb Files: 775cdf56821f4b7cf97e7b8fd806fa63 1359 science optional jellyfish_1.1.5-1.dsc f3a53180438468907eba1c65285bf261 1032465 science optional jellyfish_1.1.5.orig.tar.gz 1b20409ac402e930e97b4226ebdc646f 3064 science optional jellyfish_1.1.5-1.debian.tar.gz 05655b3e9fa1fc8d68fd62a309af581e 411816 science optional jellyfish_1.1.5-1_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.12 (GNU/Linux) iEYEARECAAYFAk+6oq8ACgkQYDBbMcCf01rzVQCeI8HKZz6+JWg7ukf4MRKtMe6v 9+0An29n4UFqmL0g2F9CeqARJw+PQ1JS =hWNk -----END PGP SIGNATURE-----
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