Package: src:bowtie2
Version: 2.0.0-beta6-1
Severity: serious
Tags: sid wheezy
User: debian-...@lists.debian.org
Usertags: kfreebsd
X-Debbugs-Cc: debian-...@lists.debian.org
Justification: fails to build from source (but built successfully in the past)
Hi!
Your package failed to build on the {hurd,kfreebsd}-i386 buildds:
/usr/bin/g++ -O3 -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3
-funroll-loops -g3 \"" \
-fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat VERSION`\""
-DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\""
-DCOMPILER_VERSION="\"`/usr/bin/g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE
-D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DBOWTIE_PTHREADS -DPREFETCH_LOCALITY=2
-DBOWTIE_MM -DBOWTIE2 -DNDEBUG -Wall \
\
-o bowtie2-align bt2_search.cpp \
ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp
bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp
limit.cpp qual.cpp pat.cpp sam.cpp read_qseq.cpp aligner_seed_policy.cpp
aligner_seed.cpp aligner_sw.cpp aligner_sw_driver.cpp aligner_cache.cpp
aligner_result.cpp ref_coord.cpp mask.cpp pe.cpp aln_sink.cpp dp_framer.cpp
scoring.cpp presets.cpp unique.cpp aligner_bt.cpp sse_util.cpp
aligner_swsse.cpp outq.cpp aligner_swsse_loc_i16.cpp aligner_swsse_ee_i16.cpp
aligner_swsse_loc_u8.cpp aligner_swsse_ee_u8.cpp bowtie_main.cpp \
-lpthread
In file included from aligner_sw.h:72:0,
from bt2_search.cpp:47:
[...]
Full build log at
https://buildd.debian.org/status/fetch.php?pkg=bowtie2&arch=kfreebsd-i386&ver=2.0.0-beta6-1&stamp=1337068947
Regards
Christoph
If you have further questions please mail debian-...@lists.debian.org
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