Your message dated Sun, 13 May 2012 13:02:31 +0000
with message-id <e1styrt-0007op...@franck.debian.org>
and subject line Bug#672526: fixed in bowtie2 2.0.0-beta6-1
has caused the Debian Bug report #672526,
regarding bowtie: FTBFS:
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
672526: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=672526
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:bowtie2
Version: 2.0.0-beta5-2
Severity: serious
Tags: sid wheezy
Justification: fails to build from source (but built successfully in the past)
Hi!
Your package failed to build on the buildds:
aligner_swsse_ee_u8.cpp:927:24: error: 'struct SSEMatrix' has no member named
'hvec'
aligner_swsse_ee_u8.cpp: In member function 'bool
SwAligner::backtraceNucleotidesEnd2EndSseU8(TAlScore, SwResult&, size_t&,
size_t&, size_t, size_t, RandomSource&)':
aligner_swsse_ee_u8.cpp:1053:2: error: '__m128i' was not declared in this scope
aligner_swsse_ee_u8.cpp:1053:11: error: 'cur_vec' was not declared in this scope
aligner_swsse_ee_u8.cpp:1053:21: error: 'left_vec' was not declared in this
scope
aligner_swsse_ee_u8.cpp:1053:32: error: 'up_vec' was not declared in this scope
aligner_swsse_ee_u8.cpp:1053:41: error: 'upleft_vec' was not declared in this
scope
aligner_swsse_ee_u8.cpp:1054:2: error: 'class EList_m128i' has no member named
'ptr'
aligner_swsse_ee_u8.cpp:1284:5: error: 'class EList_m128i' has no member named
'ptr'
make[2]: *** [bowtie2-align] Error 1
make[2]: Leaving directory
`/build/buildd-bowtie2_2.0.0-beta5-2-kfreebsd-i386-cn0TLn/bowtie2-2.0.0-beta5'
dh_auto_build: make -j1 ENABLE_SSE= returned exit code 2
make[1]: *** [override_dh_auto_build] Error 2
make[1]: Leaving directory
`/build/buildd-bowtie2_2.0.0-beta5-2-kfreebsd-i386-cn0TLn/bowtie2-2.0.0-beta5'
make: *** [build-arch] Error 2
Full build log at
https://buildd.debian.org/status/fetch.php?pkg=bowtie2&arch=kfreebsd-i386&ver=2.0.0-beta5-2&stamp=1336654193
Regards
Christoph
--
9FED 5C6C E206 B70A 5857 70CA 9655 22B9 D49A E731
Debian Developer | Lisp Hacker | CaCert Assurer
--- End Message ---
--- Begin Message ---
Source: bowtie2
Source-Version: 2.0.0-beta6-1
We believe that the bug you reported is fixed in the latest version of
bowtie2, which is due to be installed in the Debian FTP archive:
bowtie2-examples_2.0.0-beta6-1_all.deb
to main/b/bowtie2/bowtie2-examples_2.0.0-beta6-1_all.deb
bowtie2_2.0.0-beta6-1.debian.tar.gz
to main/b/bowtie2/bowtie2_2.0.0-beta6-1.debian.tar.gz
bowtie2_2.0.0-beta6-1.dsc
to main/b/bowtie2/bowtie2_2.0.0-beta6-1.dsc
bowtie2_2.0.0-beta6-1_i386.deb
to main/b/bowtie2/bowtie2_2.0.0-beta6-1_i386.deb
bowtie2_2.0.0-beta6.orig.tar.gz
to main/b/bowtie2/bowtie2_2.0.0-beta6.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 672...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Alexandre Mestiashvili <a...@biotec.tu-dresden.de> (supplier of updated bowtie2
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 11 May 2012 08:41:59 +0200
Source: bowtie2
Binary: bowtie2 bowtie2-examples
Architecture: source i386 all
Version: 2.0.0-beta6-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Alexandre Mestiashvili <a...@biotec.tu-dresden.de>
Description:
bowtie2 - ultrafast memory-efficient short read aligner
bowtie2-examples - Examples for bowtie2,
Closes: 672526
Changes:
bowtie2 (2.0.0-beta6-1) unstable; urgency=low
.
* updated debian/watch and get-orig-source to track -source suffix
* Imported Upstream version 2.0.0-beta6
* debian/patches/fix_makefile_machine_detection.patch
use -msse2 only for Intel architectures, Closes: #672526
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Files:
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bowtie2_2.0.0-beta6-1.debian.tar.gz
2e58a830deba5f4d2a11756f1013071d 993094 science extra
bowtie2_2.0.0-beta6-1_i386.deb
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bowtie2-examples_2.0.0-beta6-1_all.deb
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