Bug#655643: marked as done (pymvpa: FTBFS: AttributeError: classify)

[Debian Bug Tracking System]

Your message dated Wed, 25 Apr 2012 00:18:56 +0000
with message-id <e1smpwe-0006jk...@franck.debian.org>
and subject line Bug#655643: fixed in pymvpa 0.4.8-1
has caused the Debian Bug report #655643,
regarding pymvpa: FTBFS: AttributeError: classify
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
655643: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=655643
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

--- Begin Message ---

Source: pymvpa
Version: 0.4.7-2
Severity: serious
Justification: fails to build from source

pymvpa FTBFS:
| ======================================================================
| ERROR: testRegressionsClassifiers (mvpa.tests.test_regr.RegressionsTests)
| ----------------------------------------------------------------------
| Traceback (most recent call last):
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/tests/tests_warehouse.py",
 line 72, in do_sweep
|     method(*args_, **kwargs_)
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/tests/test_regr.py",
 line 111, in testRegressionsClassifiers
|     cverror = cv(ds)
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/measures/base.py",
 line 105, in __call__
|     result = self._call(dataset)
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/algorithms/cvtranserror.py",
 line 190, in _call
|     result = transerror(split[1], split[0])
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/clfs/transerror.py",
 line 1309, in __call__
|     self._precall(testdataset, trainingdataset)
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/clfs/transerror.py",
 line 1265, in _precall
|     self.__clf.train(trainingdataset)
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/clfs/base.py", 
line 394, in train
|     result = self._train(dataset)
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/clfs/sg/svm.py",
 line 468, in _train
|     trained_labels = self.__svm.classify().get_labels()
|   File "/usr/lib/python2.7/dist-packages/modshogun.py", line 48833, in 
<lambda>
|     __getattr__ = lambda self, name: _swig_getattr(self, LibSVR, name)
|   File "/usr/lib/python2.7/dist-packages/modshogun.py", line 59, in 
_swig_getattr
|     raise AttributeError(name)
| AttributeError: classify
|
| ======================================================================
| ERROR: testCperClass (mvpa.tests.test_svm.SVMTests)
| ----------------------------------------------------------------------
| Traceback (most recent call last):
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/tests/tests_warehouse.py",
 line 72, in do_sweep
|     method(*args_, **kwargs_)
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/tests/test_svm.py",
 line 127, in testCperClass
|     e = cve(ds__)
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/measures/base.py",
 line 105, in __call__
|     result = self._call(dataset)
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/algorithms/cvtranserror.py",
 line 190, in _call
|     result = transerror(split[1], split[0])
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/clfs/transerror.py",
 line 1310, in __call__
|     error = self._call(testdataset, trainingdataset)
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/clfs/transerror.py",
 line 1416, in _call
|     predictions = clf.predict(testdataset.samples)
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/clfs/base.py", 
line 476, in predict
|     result = self._predict(data)
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/clfs/sg/svm.py",
 line 544, in _predict
|     values_ = self.__svm.classify()
|   File "/usr/lib/python2.7/dist-packages/modshogun.py", line 46028, in 
<lambda>
|     __getattr__ = lambda self, name: _swig_getattr(self, LibSVM, name)
|   File "/usr/lib/python2.7/dist-packages/modshogun.py", line 59, in 
_swig_getattr
|     raise AttributeError(name)
| AttributeError: classify
|
| ======================================================================
| ERROR: testFeatureSelectionClassifierWithRegression 
(mvpa.tests.test_clf.ClassifiersTests)
| ----------------------------------------------------------------------
| Traceback (most recent call last):
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/tests/test_clf.py",
 line 417, in testFeatureSelectionClassifierWithRegression
|     clf_reg.train(dat)
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/clfs/base.py", 
line 394, in train
|     result = self._train(dataset)
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/clfs/meta.py", 
line 1352, in _train
|     self.__maskclf.clf.train(wdataset)
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/clfs/base.py", 
line 394, in train
|     result = self._train(dataset)
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/clfs/sg/svm.py",
 line 468, in _train
|     trained_labels = self.__svm.classify().get_labels()
|   File "/usr/lib/python2.7/dist-packages/modshogun.py", line 48833, in 
<lambda>
|     __getattr__ = lambda self, name: _swig_getattr(self, LibSVR, name)
|   File "/usr/lib/python2.7/dist-packages/modshogun.py", line 59, in 
_swig_getattr
|     raise AttributeError(name)
| AttributeError: classify
|
| ======================================================================
| ERROR: testGenericTests (mvpa.tests.test_clf.ClassifiersTests)
| Test all classifiers for conformant behavior
| ----------------------------------------------------------------------
| Traceback (most recent call last):
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/tests/test_clf.py",
 line 713, in testGenericTests
|     clf.train(traindata)
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/clfs/base.py", 
line 394, in train
|     result = self._train(dataset)
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/clfs/sg/svm.py",
 line 468, in _train
|     trained_labels = self.__svm.classify().get_labels()
|   File "/usr/lib/python2.7/dist-packages/modshogun.py", line 48833, in 
<lambda>
|     __getattr__ = lambda self, name: _swig_getattr(self, LibSVR, name)
|   File "/usr/lib/python2.7/dist-packages/modshogun.py", line 59, in 
_swig_getattr
|     raise AttributeError(name)
| AttributeError: classify
|
| ======================================================================
| ERROR: testRetrainables (mvpa.tests.test_clf.ClassifiersTests)
| ----------------------------------------------------------------------
| Traceback (most recent call last):
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/tests/tests_warehouse.py",
 line 72, in do_sweep
|     method(*args_, **kwargs_)
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/tests/test_clf.py",
 line 605, in testRetrainables
|     err_1 = trerr(dstest, dstrain)
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/clfs/transerror.py",
 line 1310, in __call__
|     error = self._call(testdataset, trainingdataset)
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/clfs/transerror.py",
 line 1416, in _call
|     predictions = clf.predict(testdataset.samples)
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/clfs/base.py", 
line 476, in predict
|     result = self._predict(data)
|   File 
"/build/pymvpa-ZxRJAY/pymvpa-0.4.7/build/lib.linux-i686-2.7/mvpa/clfs/sg/svm.py",
 line 544, in _predict
|     values_ = self.__svm.classify()
|   File "/usr/lib/python2.7/dist-packages/modshogun.py", line 46028, in 
<lambda>
|     __getattr__ = lambda self, name: _swig_getattr(self, LibSVM, name)
|   File "/usr/lib/python2.7/dist-packages/modshogun.py", line 59, in 
_swig_getattr
|     raise AttributeError(name)
| AttributeError: classify
|
| ----------------------------------------------------------------------
| Ran 222 tests in 51.155s
|
| FAILED (errors=5)
| MVPA_SEED=41891469
| make: *** [install/python-mvpa] Error 1

--
Jakub Wilk

--- End Message ---

--- Begin Message ---

Source: pymvpa
Source-Version: 0.4.8-1

We believe that the bug you reported is fixed in the latest version of
pymvpa, which is due to be installed in the Debian FTP archive:

pymvpa_0.4.8-1.debian.tar.gz
  to main/p/pymvpa/pymvpa_0.4.8-1.debian.tar.gz
pymvpa_0.4.8-1.dsc
  to main/p/pymvpa/pymvpa_0.4.8-1.dsc
pymvpa_0.4.8.orig.tar.gz
  to main/p/pymvpa/pymvpa_0.4.8.orig.tar.gz
python-mvpa-doc_0.4.8-1_all.deb
  to main/p/pymvpa/python-mvpa-doc_0.4.8-1_all.deb
python-mvpa-lib_0.4.8-1_amd64.deb
  to main/p/pymvpa/python-mvpa-lib_0.4.8-1_amd64.deb
python-mvpa_0.4.8-1_all.deb
  to main/p/pymvpa/python-mvpa_0.4.8-1_all.deb



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 655...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Yaroslav Halchenko <deb...@onerussian.com> (supplier of updated pymvpa package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Format: 1.8
Date: Mon, 23 Apr 2012 23:19:48 -0400
Source: pymvpa
Binary: python-mvpa python-mvpa-doc python-mvpa-lib
Architecture: source all amd64
Version: 0.4.8-1
Distribution: unstable
Urgency: low
Maintainer: NeuroDebian Team <t...@neuro.debian.net>
Changed-By: Yaroslav Halchenko <deb...@onerussian.com>
Description: 
 python-mvpa - multivariate pattern analysis with Python
 python-mvpa-doc - documentation and examples for PyMVPA
 python-mvpa-lib - low-level implementations and bindings for PyMVPA
Closes: 655643 655649
Changes: 
 pymvpa (0.4.8-1) unstable; urgency=low
 .
   * Upstream bugfix release:
     - Fixes compatibility with libsvm 3.10 and shogun >= 1.0
       (Closes: #655643) (Thanks Jakub Wilk for report and Colin Watson
       for the tentative patch)
   * Bump Standards-Version to 3.9.3 -- no changes are due
   * Removed not needed XS-DM-Upload-Allowed
   * Removed shogun-python-modular from Build-Depends due to its
     uninstallability
   * set -e for every loop to FTBFS upon errors (Closes: #655649)
     (Thanks Jakub again)
   * Added debian/upstream with a publication reference
   * Adjusted debian/copyright: DEP-5 compliance, removed bibtex reference
   * Added a call to dh_numpy (where present) to provide numpy-abi depends
Checksums-Sha1: 
 be59e78ae45ca94e0288eb27980b97841434be97 1686 pymvpa_0.4.8-1.dsc
 0b595f6b4e400b7372ab5ac021cd92333221ce5d 4184583 pymvpa_0.4.8.orig.tar.gz
 38f53d69be69176367f4d9e98149f8458473faec 8525 pymvpa_0.4.8-1.debian.tar.gz
 1e1593dfbef5952dae195a65fd9082564da3532f 2204840 python-mvpa_0.4.8-1_all.deb
 35b943a6441aaf847f3f49d2feaadeb0b2df81e9 8453796 
python-mvpa-doc_0.4.8-1_all.deb
 38217df60882180bd5282a95c7e7eed53c05301d 72802 
python-mvpa-lib_0.4.8-1_amd64.deb
Checksums-Sha256: 
 760f66e09d73c758ac9a756098f81b506a73badbced1c8ddfb497dd5597855ba 1686 
pymvpa_0.4.8-1.dsc
 7e968352a5daad4c1654c33202b017b100dc5ca13d5d93d6881de7785beaac71 4184583 
pymvpa_0.4.8.orig.tar.gz
 a73b2ac41489847fec29a5422fba6ece2c50d4b003539f9f1e57958513d72b10 8525 
pymvpa_0.4.8-1.debian.tar.gz
 c038b3eb27e3e7c8b22a21063ff19d08fb3a31a795c1a2f9bcd3a2ecab491daf 2204840 
python-mvpa_0.4.8-1_all.deb
 39e6ed0c1e44268d7b2899c8064cbc019d0d001d30d4c58e67202a9edf5c57ab 8453796 
python-mvpa-doc_0.4.8-1_all.deb
 cf91335e3c89ad58eb74863e539f9063c0a757b9e11a1957b0d0bc636bdbf81a 72802 
python-mvpa-lib_0.4.8-1_amd64.deb
Files: 
 2a9c3770ada84e6d5bd762ab39f3df3f 1686 python optional pymvpa_0.4.8-1.dsc
 04ad272cef23bd4eeb27b626e97e4317 4184583 python optional 
pymvpa_0.4.8.orig.tar.gz
 e6c4f156625dafbf9af6cedc7f6d0247 8525 python optional 
pymvpa_0.4.8-1.debian.tar.gz
 107cf7ebfded1424dc4fa28b31bb60d9 2204840 python optional 
python-mvpa_0.4.8-1_all.deb
 2500dca033972ccab84e9ff9d275e466 8453796 doc optional 
python-mvpa-doc_0.4.8-1_all.deb
 4560f65e852556ab0c9c1ac8ad589788 72802 python optional 
python-mvpa-lib_0.4.8-1_amd64.deb

-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.11 (GNU/Linux)

iEYEARECAAYFAk+XP8kACgkQjRFFY3XAJMjfpgCeJ7w9tNuPakp/RmXNeSisQdk3
H1MAn1qTQV3hBl4mApDxKuoDpuR1dSjM
=1HMG
-----END PGP SIGNATURE-----

--- End Message ---