Your message dated Wed, 25 Jan 2012 13:33:30 +0000
with message-id <e1rq2yg-0002eo...@franck.debian.org>
and subject line Bug#656755: fixed in libhmsbeagle 1.0-4
has caused the Debian Bug report #656755,
regarding libhmsbeagle FTBFS on everything except amd64
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
656755: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=656755
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
package: libhmsbeagle
version: 1.0-2
severity: serious
Note: i'm not an expert on this package, just someone looking at build
failures and filing bugs.
It seems things are a little more complex than they first appeared. In
particular it seems libhmsbeagle has a specific "sse2 plugin" which can
only be built with sse2 enabled and that is built even if
--enable-sse=no is passed (which seems like a bug in the upstream build
system to me). Therefore disabling -msse2 has caused the package to
FTBFS everywhere except amd64.
For non pc architectures I would think the sse2 plugin should simply be
disabled.
For i386 the descision on what to do there requires knowlege of the
internals of the software. If the software is capable of making sensible
descisions about whether to use the sse2 plugin at runtime then the sse2
plugin (but NOT the rest of the package) should be built with -msse2
(this will probablly require adding an option to the buildscripts along
the lines of "--enable-sse=ssepluginonly"). If the software is NOT
capable of making sensible descisions about whether to use the sse2
plugin at runtime then either it should simply be disabled on i386 or
the ability to make sensible descsions about whether to use it at
runtime should be added to the code.
--- End Message ---
--- Begin Message ---
Source: libhmsbeagle
Source-Version: 1.0-4
We believe that the bug you reported is fixed in the latest version of
libhmsbeagle, which is due to be installed in the Debian FTP archive:
libhmsbeagle-dev_1.0-4_amd64.deb
to main/libh/libhmsbeagle/libhmsbeagle-dev_1.0-4_amd64.deb
libhmsbeagle-java_1.0-4_all.deb
to main/libh/libhmsbeagle/libhmsbeagle-java_1.0-4_all.deb
libhmsbeagle1_1.0-4_amd64.deb
to main/libh/libhmsbeagle/libhmsbeagle1_1.0-4_amd64.deb
libhmsbeagle_1.0-4.debian.tar.gz
to main/libh/libhmsbeagle/libhmsbeagle_1.0-4.debian.tar.gz
libhmsbeagle_1.0-4.dsc
to main/libh/libhmsbeagle/libhmsbeagle_1.0-4.dsc
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 656...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated libhmsbeagle package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Wed, 25 Jan 2012 13:54:59 +0100
Source: libhmsbeagle
Binary: libhmsbeagle-dev libhmsbeagle1 libhmsbeagle-java
Architecture: source amd64 all
Version: 1.0-4
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
libhmsbeagle-dev - High-performance lib for Bayesian and Maximum Likelihood
phylogen
libhmsbeagle-java - High-performance lib for Bayesian and Maximum Likelihood
phylogen
libhmsbeagle1 - High-performance lib for Bayesian and Maximum Likelihood
phylogen
Closes: 656755
Changes:
libhmsbeagle (1.0-4) unstable; urgency=low
.
* debian/patches/disable_cpu_sse_plugin.patch: Apply patch from Peter
Green (thanks for your help, Peter) and
debian/rules: Enable sse for amd64 (only) to profit from plugin library
Closes: #656755
Checksums-Sha1:
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547d2c4786278eb15ff97a9f2d1349a828b18fd2 7154 libhmsbeagle_1.0-4.debian.tar.gz
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libhmsbeagle-dev_1.0-4_amd64.deb
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412e9a63af1874c382a2345aa110af598567cb47 20364 libhmsbeagle-java_1.0-4_all.deb
Checksums-Sha256:
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libhmsbeagle_1.0-4.dsc
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libhmsbeagle-java_1.0-4_all.deb
Files:
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d7276a48da261633d4d522a73089ef45 7154 libs extra
libhmsbeagle_1.0-4.debian.tar.gz
2812376ae250774980ab0656584dd8b7 503782 libdevel extra
libhmsbeagle-dev_1.0-4_amd64.deb
7f773f4544ba411d3b6e86c3c5504f7f 124054 libs extra
libhmsbeagle1_1.0-4_amd64.deb
9577cb30adeb1a42ba990ef0aa1d0fdf 20364 java extra
libhmsbeagle-java_1.0-4_all.deb
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