Your message dated Tue, 10 Jan 2012 00:48:54 +0000
with message-id <e1rkptw-00054f...@franck.debian.org>
and subject line Bug#627861: fixed in sra-sdk 2.1.7a-1
has caused the Debian Bug report #627861,
regarding sra-sdk: FTBFS: needs formal adjustments for most architectures
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
627861: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=627861
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: sra-sdk
Version: 2.0.1-1
Severity: serious
Justification: fails to build from source
Charles,
sra-sdk builds only on (linux-)amd64 at the moment. Of the remaining
architectures, i386 comes closest to succeeding; however, builds there
still fail because the packaging specifically expects bin64 and lib64
output directories.
On other Linux architectures, the build fails very early because
upstream's build system treats them all as i386, passing -m32 (which
PowerPC and SPARC are the only non-x86 architectures to support) and
-march=pentium4 (which is obviously x86-specific). I'd advise editing
build/Makefile.gcc to remove both: -m32 is already the default on i386
(as is -m64 on amd64), and -march=pentium4 yields insufficiently
portable binaries. (You can substitute -mtune=pentium4 if you want,
but only on actual i386!)
Finally, on kFreeBSD and the Hurd, the build fails because upstream's
build system doesn't recognize them at all. I'd suggest directing it
to treat them both as equivalent to Linux, as they should be close
enough for the SRA SDK's purposes.
Could you please look into these issues?
Thanks!
-- System Information:
Debian Release: wheezy/sid
APT prefers testing
APT policy: (990, 'testing'), (500, 'unstable'), (500, 'stable')
Architecture: amd64 (x86_64)
Kernel: Linux 2.6.39-1-amd64 (SMP w/2 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
--- End Message ---
--- Begin Message ---
Source: sra-sdk
Source-Version: 2.1.7a-1
We believe that the bug you reported is fixed in the latest version of
sra-sdk, which is due to be installed in the Debian FTP archive:
sra-sdk_2.1.7a-1.debian.tar.gz
to main/s/sra-sdk/sra-sdk_2.1.7a-1.debian.tar.gz
sra-sdk_2.1.7a-1.dsc
to main/s/sra-sdk/sra-sdk_2.1.7a-1.dsc
sra-sdk_2.1.7a.orig.tar.gz
to main/s/sra-sdk/sra-sdk_2.1.7a.orig.tar.gz
sra-toolkit-libs-dev_2.1.7a-1_amd64.deb
to main/s/sra-sdk/sra-toolkit-libs-dev_2.1.7a-1_amd64.deb
sra-toolkit-libs0_2.1.7a-1_amd64.deb
to main/s/sra-sdk/sra-toolkit-libs0_2.1.7a-1_amd64.deb
sra-toolkit_2.1.7a-1_amd64.deb
to main/s/sra-sdk/sra-toolkit_2.1.7a-1_amd64.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 627...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Charles Plessy <ple...@debian.org> (supplier of updated sra-sdk package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 10 Jan 2012 09:06:14 +0900
Source: sra-sdk
Binary: sra-toolkit sra-toolkit-libs0 sra-toolkit-libs-dev
Architecture: source amd64
Version: 2.1.7a-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Charles Plessy <ple...@debian.org>
Description:
sra-toolkit - utilities for the NCBI Sequence Read Archive
sra-toolkit-libs-dev - Development files for the NCBI SRA Toolkit's libraries
sra-toolkit-libs0 - Libraries for the SRA Toolkit
Closes: 627861
Changes:
sra-sdk (2.1.7a-1) unstable; urgency=low
.
[ Charles Plessy ]
61e22aa New upstream release (Closes: #627861).
1b09fd5 Normalised debian/copyright file with config-edit.
a93e7b5 Wildcard characters to match 64 or 32 according to the architecture.
3d66d80 New upstream source location in debian/watch.
74e5234 Mark the use of git-buildpackage by debian/gbp.conf.
0074d68 Simplified Homepage URL in debian/control.
5cd8039 Use a target that allows dynamic linking (debian/rules).
9815817 Do not install empty /usr/bin/ncbi directory (debian/rules).
fb42792 Updated debian/sra-toolkit-libs0.symbols.
866f773 Install config.kfg and vdb-copy.kfg in /etc/ncbi.
.
[ Andreas Tille ]
9e6e831 Suggest patches for build system to build on non i386&amd64
architectures as well as BSD and Hurd
Checksums-Sha1:
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6bd1dc74c513c0d1326c183701ddacb7603c9240 911984
sra-toolkit-libs0_2.1.7a-1_amd64.deb
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sra-toolkit-libs-dev_2.1.7a-1_amd64.deb
Checksums-Sha256:
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sra-sdk_2.1.7a-1.dsc
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sra-sdk_2.1.7a.orig.tar.gz
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sra-sdk_2.1.7a-1.debian.tar.gz
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sra-toolkit_2.1.7a-1_amd64.deb
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sra-toolkit-libs0_2.1.7a-1_amd64.deb
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sra-toolkit-libs-dev_2.1.7a-1_amd64.deb
Files:
65b34a11ca6b1a53ceb2e99e3c173030 2174 science optional sra-sdk_2.1.7a-1.dsc
8c83199d40ecf0afc460c699681c3495 2068595 science optional
sra-sdk_2.1.7a.orig.tar.gz
bc4225f54e8e84140dcc045193049d96 20676 science optional
sra-sdk_2.1.7a-1.debian.tar.gz
58c0283c64eb9be9e1c057b833417eb4 1350046 science optional
sra-toolkit_2.1.7a-1_amd64.deb
8494ecc96713b94d2f918f57d54a1dc7 911984 science optional
sra-toolkit-libs0_2.1.7a-1_amd64.deb
c553ab8849494dc77d2b6e1120c8a7cd 6320 science optional
sra-toolkit-libs-dev_2.1.7a-1_amd64.deb
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--- End Message ---
