Your message dated Fri, 26 Aug 2011 09:32:12 +0000
with message-id <e1qwslo-0007ap...@franck.debian.org>
and subject line Bug#639257: fixed in adios 1.3-7
has caused the Debian Bug report #639257,
regarding libadios-dev and gpp: error when trying to install together
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
639257: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=639257
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: gpp,libadios-dev
Version: gpp/2.024-3
Version: libadios-dev/1.3-6
Severity: serious
User: trei...@debian.org
Usertags: edos-file-overwrite
Date: 2011-08-25
Architecture: amd64
Distribution: sid
Hi,
automatic installation tests of packages that share a file and at the
same time do not conflict by their package dependency relationships has
detected the following problem:
WARNING: The following packages cannot be authenticated!
libkeyutils1 libkrb5support0 libk5crypto3 libkrb5-3 libgssapi-krb5-2
libsasl2-2 libldap-2.4-2 librtmp0 openssl ca-certificates libcurl3-gnutls
libquadmath0 libgfortran3 libdb4.8 mime-support python2.6-minimal libexpat1
python2.6 python-minimal python gpp libibverbs1 libnuma1 libtorque2
libopenmpi1.3 libhdf5-openmpi-1.8.4 libmxml1 libnetcdf6 libadios-dev
Preconfiguring packages ...
Authentication warning overridden.
Can not write log, openpty() failed (/dev/pts not mounted?)
Selecting previously deselected package libkeyutils1.
(Reading database ... 10663 files and directories currently installed.)
Unpacking libkeyutils1 (from .../libkeyutils1_1.5.2-2_amd64.deb) ...
Selecting previously deselected package libkrb5support0.
Unpacking libkrb5support0 (from .../libkrb5support0_1.9.1+dfsg-2_amd64.deb) ...
Selecting previously deselected package libk5crypto3.
Unpacking libk5crypto3 (from .../libk5crypto3_1.9.1+dfsg-2_amd64.deb) ...
Selecting previously deselected package libkrb5-3.
Unpacking libkrb5-3 (from .../libkrb5-3_1.9.1+dfsg-2_amd64.deb) ...
Selecting previously deselected package libgssapi-krb5-2.
Unpacking libgssapi-krb5-2 (from .../libgssapi-krb5-2_1.9.1+dfsg-2_amd64.deb)
...
Selecting previously deselected package libsasl2-2.
Unpacking libsasl2-2 (from
.../libsasl2-2_2.1.24~rc1.dfsg1+cvs2011-05-23-6_amd64.deb) ...
Selecting previously deselected package libldap-2.4-2.
Unpacking libldap-2.4-2 (from .../libldap-2.4-2_2.4.25-3_amd64.deb) ...
Selecting previously deselected package librtmp0.
Unpacking librtmp0 (from .../librtmp0_2.4~20110711.gitc28f1bab-1_amd64.deb) ...
Selecting previously deselected package openssl.
Unpacking openssl (from .../openssl_1.0.0d-3_amd64.deb) ...
Selecting previously deselected package ca-certificates.
Unpacking ca-certificates (from .../ca-certificates_20110502_all.deb) ...
Selecting previously deselected package libcurl3-gnutls.
Unpacking libcurl3-gnutls (from .../libcurl3-gnutls_7.21.7-1_amd64.deb) ...
Selecting previously deselected package libquadmath0.
Unpacking libquadmath0 (from .../libquadmath0_4.6.1-8_amd64.deb) ...
Selecting previously deselected package libgfortran3.
Unpacking libgfortran3 (from .../libgfortran3_4.6.1-8_amd64.deb) ...
Selecting previously deselected package libdb4.8.
Unpacking libdb4.8 (from .../libdb4.8_4.8.30-9_amd64.deb) ...
Selecting previously deselected package mime-support.
Unpacking mime-support (from .../mime-support_3.51-1_all.deb) ...
Selecting previously deselected package python2.6-minimal.
Unpacking python2.6-minimal (from .../python2.6-minimal_2.6.7-4_amd64.deb) ...
Selecting previously deselected package libexpat1.
Unpacking libexpat1 (from .../libexpat1_2.0.1-7_amd64.deb) ...
Selecting previously deselected package python2.6.
Unpacking python2.6 (from .../python2.6_2.6.7-4_amd64.deb) ...
Selecting previously deselected package python-minimal.
Unpacking python-minimal (from .../python-minimal_2.6.7-3_all.deb) ...
Selecting previously deselected package python.
Unpacking python (from .../python_2.6.7-3_all.deb) ...
Selecting previously deselected package gpp.
Unpacking gpp (from .../archives/gpp_2.24-3_amd64.deb) ...
Selecting previously deselected package libibverbs1.
Unpacking libibverbs1 (from .../libibverbs1_1.1.5-1_amd64.deb) ...
Selecting previously deselected package libnuma1.
Unpacking libnuma1 (from .../libnuma1_2.0.5-1_amd64.deb) ...
Selecting previously deselected package libtorque2.
Unpacking libtorque2 (from .../libtorque2_2.4.16+dfsg-1_amd64.deb) ...
Selecting previously deselected package libopenmpi1.3.
Unpacking libopenmpi1.3 (from .../libopenmpi1.3_1.4.3-2.1_amd64.deb) ...
Selecting previously deselected package libhdf5-openmpi-1.8.4.
Unpacking libhdf5-openmpi-1.8.4 (from
.../libhdf5-openmpi-1.8.4_1.8.4-patch1-3_amd64.deb) ...
Selecting previously deselected package libmxml1.
Unpacking libmxml1 (from .../libmxml1_2.6-2_amd64.deb) ...
Selecting previously deselected package libnetcdf6.
Unpacking libnetcdf6 (from .../libnetcdf6_1%3a4.1.1-5_amd64.deb) ...
Selecting previously deselected package libadios-dev.
Unpacking libadios-dev (from .../libadios-dev_1.3-6_amd64.deb) ...
dpkg: error processing /var/cache/apt/archives/libadios-dev_1.3-6_amd64.deb
(--unpack):
trying to overwrite '/usr/bin/gpp', which is also in package gpp 2.24-3
configured to not write apport reports
dpkg-deb: error: subprocess paste was killed by signal (Broken pipe)
Processing triggers for man-db ...
Errors were encountered while processing:
/var/cache/apt/archives/libadios-dev_1.3-6_amd64.deb
E: Sub-process /usr/bin/dpkg returned an error code (1)
This is a serious bug as it makes installation fail, and violates
sections 7.6.1 and 10.1 of the policy. An optimal solution would
consist in only one of the packages installing that file, and renaming
or removing the file in the other package. Depending on the
circumstances you might also consider Replace relations or file
diversions. If the conflicting situation cannot be resolved then, as a
last resort, the two packages have to declare a mutual
Conflict. Please take into account that Replaces, Conflicts and
diversions should only be used when packages provide different
implementations for the same functionality.
Here is a list of files that are known to be shared by both packages
(according to the Contents file for sid/amd64, which may be
slightly out of sync):
/usr/bin/gpp
This bug is assigned to both packages. If you, the maintainers of
the two packages in question, have agreed on which of the packages will
resolve the problem please reassign the bug to that package. You may
also register in the BTS that the other package is affected by the bug.
-Ralf.
PS: for more information about the detection of file overwrite errors
of this kind see http://edos.debian.net/file-overwrites/.
--- End Message ---
--- Begin Message ---
Source: adios
Source-Version: 1.3-7
We believe that the bug you reported is fixed in the latest version of
adios, which is due to be installed in the Debian FTP archive:
adios_1.3-7.debian.tar.gz
to main/a/adios/adios_1.3-7.debian.tar.gz
adios_1.3-7.dsc
to main/a/adios/adios_1.3-7.dsc
libadios-dev_1.3-7_i386.deb
to main/a/adios/libadios-dev_1.3-7_i386.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 639...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Alastair McKinstry <mckins...@debian.org> (supplier of updated adios package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 25 Aug 2011 18:17:09 +0100
Source: adios
Binary: libadios-dev
Architecture: source i386
Version: 1.3-7
Distribution: unstable
Urgency: low
Maintainer: Alastair McKinstry <mckins...@debian.org>
Changed-By: Alastair McKinstry <mckins...@debian.org>
Description:
libadios-dev - ADIOS Adaptable IO system for simulations
Closes: 639257
Changes:
adios (1.3-7) unstable; urgency=low
.
* Rename gpp to adiosxml2h. (Will be renamed by upstream in next release)
Closes: #639257.
* Move DH_COMPAT=8
Checksums-Sha1:
0a5852e8140465ea6e6bb42e89435e9080b35e93 1796 adios_1.3-7.dsc
0a3739f1556e2f75befb4f5e38eacb6b3113cea0 5115 adios_1.3-7.debian.tar.gz
69e40479898e4deaa83c7a7251c86ee67f2f635e 9648458 libadios-dev_1.3-7_i386.deb
Checksums-Sha256:
2ea11b4dea6c4106909a878bcf5a843a7e67a2837b3fe6b06f72a84600c7883c 1796
adios_1.3-7.dsc
a0864a2e9aa4d3bc6f48e0f7e42d735987f71915eb03eb215263493899b44651 5115
adios_1.3-7.debian.tar.gz
965155931617dc7525e0b509941abaccfebee3635355c5f8b965fde296f10651 9648458
libadios-dev_1.3-7_i386.deb
Files:
d314331d0ea7622f846e27b1e134564a 1796 science optional adios_1.3-7.dsc
9367b9988771731bc28ff008f9e0f5d3 5115 science optional
adios_1.3-7.debian.tar.gz
3da24c049162bbf4a8b12f885a74a9be 9648458 libdevel optional
libadios-dev_1.3-7_i386.deb
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.11 (GNU/Linux)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=Gm6g
-----END PGP SIGNATURE-----
--- End Message ---
