Your message dated Mon, 22 Aug 2011 19:17:22 +0000
with message-id <e1qvzzu-0002sh...@franck.debian.org>
and subject line Bug#631589: fixed in dolfin 1.0-beta-1
has caused the Debian Bug report #631589,
regarding python-dolfin: python -c "import dolfin" fails with MPI error
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
631589: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=631589
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: python-dolfin
Version: 0.9.11-1+b1
Severity: grave
Justification: renders package unusable
Hi,
Here's a transcript.
$ python -c "import dolfin"
*** The MPI_comm_size() function was called before MPI_INIT was invoked.
*** This is disallowed by the MPI standard.
*** Your MPI job will now abort.
Same error as reported in
https://answers.launchpad.net/dolfin/+question/152620
which was fixed in ubuntu ppa.
Please upload a fixed package for debian as well.
Regards,
ST
-- System Information:
Debian Release: wheezy/sid
APT prefers unstable
APT policy: (900, 'unstable'), (500, 'gutsy')
Architecture: amd64 (x86_64)
Kernel: Linux 2.6.39-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_HK.UTF-8, LC_CTYPE=en_US.UTF8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash
Versions of packages python-dolfin depends on:
ii libamd2.2.0 1:3.4.0-2 approximate minimum degree orderin
ii libarmadillo2 1.99.3+dfsg-1 streamlined C++ linear algebra lib
ii libarpack2 2.1+parpack96.dfsg-3+b1 Fortran77 subroutines to solve lar
ii libatlas3gf-base 3.8.4-3 Automatically Tuned Linear Algebra
ii libblas3gf [libb 1.2-8 Basic Linear Algebra Reference imp
ii libboost-filesys 1.46.1-6 filesystem operations (portable pa
ii libboost-program 1.46.1-6 program options library for C++
ii libboost-system1 1.46.1-6 Operating system (e.g. diagnostics
ii libboost-thread1 1.46.1-6 portable C++ multi-threading
pn libc6 <none> (no description available)
ii libcamd2.2.0 1:3.4.0-2 symmetric approximate minimum degr
ii libccolamd2.7.1 1:3.4.0-2 constrained column approximate lib
ii libcholmod1.7.1 1:3.4.0-2 sparse Cholesky factorization libr
ii libcolamd2.7.1 1:3.4.0-2 column approximate minimum degree
ii libdolfin0 0.9.11-1+b1 shared libraries for DOLFIN
ii libdolfin0-dev 0.9.11-1+b1 Shared links and header files for
ii libgcc1 1:4.6.0-14 GCC support library
ii libgomp1 4.6.0-14 GCC OpenMP (GOMP) support library
ii liblapack3gf [li 3.3.0-4 library of linear algebra routines
ii libopenmpi1.3 1.4.3-2.1 high performance message passing l
ii libpetsc3.1 3.1.dfsg-11 Shared libraries for version 3.1 o
ii libptscotch-5.1 5.1.11.dfsg-7 MPI programs and libraries for gra
ii libpython2.6 2.6.7-1 Shared Python runtime library (ver
ii libpython2.7 2.7.2-1 Shared Python runtime library (ver
ii libslepc3.1 3.1-p6.dfsg-1 Scalable Library for Eigenvalue Pr
ii libstdc++6 4.6.0-14 GNU Standard C++ Library v3
ii libtrilinos 10.4.0.dfsg-1 parallel solver libraries within a
ii libumfpack5.4.0 1:3.4.0-2 sparse LU factorization library
ii libxml2 2.7.8.dfsg-3 GNOME XML library
ii python 2.6.6-14 interactive high-level object-orie
ii python-ffc 0.9.10-2 compiler for finite element variat
ii python-instant 0.9.10-1 simple inlining of C / C++ code in
ii python-numpy 1:1.5.1-2+b1 Numerical Python adds a fast array
ii python-pytrilino 10.4.0.dfsg-1 parallel solver libraries within a
ii python-ufc 2.0.1-1 Python utilities (templates) for g
ii python-ufl 0.9.1-1 unified language for form-compiler
ii python-viper 0.4.7-2 minimalistic scientific plotter an
ii python2.6 2.6.7-1 An interactive high-level object-o
ii python2.7 2.7.2-1 An interactive high-level object-o
ii swig2.0 2.0.4-2 Generate scripting interfaces to C
ii zlib1g 1:1.2.3.4.dfsg-3 compression library - runtime
python-dolfin recommends no packages.
Versions of packages python-dolfin suggests:
ii dolfin-doc 0.9.11-1 Documentation and demo programs fo
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: dolfin
Source-Version: 1.0-beta-1
We believe that the bug you reported is fixed in the latest version of
dolfin, which is due to be installed in the Debian FTP archive:
dolfin-bin_1.0-beta-1_all.deb
to main/d/dolfin/dolfin-bin_1.0-beta-1_all.deb
dolfin-dev_1.0-beta-1_all.deb
to main/d/dolfin/dolfin-dev_1.0-beta-1_all.deb
dolfin-doc_1.0-beta-1_all.deb
to main/d/dolfin/dolfin-doc_1.0-beta-1_all.deb
dolfin_1.0-beta-1.debian.tar.gz
to main/d/dolfin/dolfin_1.0-beta-1.debian.tar.gz
dolfin_1.0-beta-1.dsc
to main/d/dolfin/dolfin_1.0-beta-1.dsc
dolfin_1.0-beta.orig.tar.gz
to main/d/dolfin/dolfin_1.0-beta.orig.tar.gz
libdolfin1.0-dbg_1.0-beta-1_amd64.deb
to main/d/dolfin/libdolfin1.0-dbg_1.0-beta-1_amd64.deb
libdolfin1.0-dev_1.0-beta-1_amd64.deb
to main/d/dolfin/libdolfin1.0-dev_1.0-beta-1_amd64.deb
libdolfin1.0_1.0-beta-1_amd64.deb
to main/d/dolfin/libdolfin1.0_1.0-beta-1_amd64.deb
python-dolfin_1.0-beta-1_amd64.deb
to main/d/dolfin/python-dolfin_1.0-beta-1_amd64.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 631...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Johannes Ring <joha...@simula.no> (supplier of updated dolfin package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Wed, 17 Aug 2011 12:01:58 +0200
Source: dolfin
Binary: libdolfin1.0-dev dolfin-dev libdolfin1.0 libdolfin1.0-dbg python-dolfin
dolfin-doc dolfin-bin
Architecture: source all amd64
Version: 1.0-beta-1
Distribution: unstable
Urgency: low
Maintainer: Debian Science Team
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Johannes Ring <joha...@simula.no>
Description:
dolfin-bin - Executable scripts for DOLFIN
dolfin-dev - Empty package depending on latest DOLFIN development package
dolfin-doc - Documentation and demo programs for DOLFIN
libdolfin1.0 - shared libraries for DOLFIN
libdolfin1.0-dbg - Shared libraries with debugging symbols for DOLFIN
libdolfin1.0-dev - Shared links and header files for DOLFIN
python-dolfin - Python interface for DOLFIN
Closes: 631589
Changes:
dolfin (1.0-beta-1) unstable; urgency=low
.
* New upstream release. This release fixes a large number of bugs and
brings many improvements. The most notable changes are improved
support for parallel computing and a redesigned and simplified
interface for solving variational problems.
* debian/control:
- Add libboost-iostreams-dev to Build-Depends and to Depends in -dev
package.
- Replace libdolfin0 with libdolfin1.0 and libdolfin0-dev with
libdolfin1.0-dev to follow library soname.
- Bump required version for ufc, python-ufc, python-ffc,
python-viper, python-ufl, and python-instant.
- Add provide, replace and conflict on libdolfin0-dev for binary
package libdolfin1.0-dev. Similarly for libdolfin1.0-dbg.
* Add patch for importing PyTrilinos before dolfin (closes: #631589).
* Rename libdolfin0.install to libdolfin1.0.install and
libdolfin0-dev.install to libdolfin1.0-dev.install to follow library
soname.
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