Your message dated Fri, 22 Jul 2011 15:33:31 +0000
with message-id <e1qkhjh-0005rn...@franck.debian.org>
and subject line Bug#631911: fixed in ball 1.4.0-4
has caused the Debian Bug report #631911,
regarding libball1.4-doc and libball1.3-doc: error when trying to install
together
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
631911: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=631911
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: libball1.3-doc,libball1.4-doc
Version: libball1.3-doc/1.3.2-2
Version: libball1.4-doc/1.4.0-1
Severity: serious
User: trei...@debian.org
Usertags: edos-file-overwrite
Date: 2011-06-28
Architecture: amd64
Distribution: sid
Hi,
automatic installation tests of packages that share a file and at the
same time do not conflict by their package dependency relationships has
detected the following problem:
WARNING: The following packages cannot be authenticated!
multiarch-support gcc-4.6-base libgcc1 libstdc++6 libquadmath0 libgfortran3
libpcre3 mime-support python2.6-minimal libdb4.8 libexpat1 python2.6
libboost-system1.42.0 libboost-thread1.42.0 libfftw3-3 libgsl0ldbl
libpython2.6 libglib2.0-0 libqtcore4 libqt4-sql libqt4-xml libball1.3
libball1.3-doc libblas3gf libicu44 libboost-regex1.42.0 liblapack3gf
libdbus-1-3 libqt4-dbus libqt4-network libball1.4-data libball1.4
libball1.4-doc
Extracting templates from packages: 90%
Extracting templates from packages: 100%
Preconfiguring packages ...
Authentication warning overridden.
Can not write log, openpty() failed (/dev/pts not mounted?)
Selecting previously deselected package multiarch-support.
(Reading database ... 9223 files and directories currently installed.)
Unpacking multiarch-support (from .../multiarch-support_2.13-7_amd64.deb) ...
Can not write log, openpty() failed (/dev/pts not mounted?)
Setting up multiarch-support (2.13-7) ...
Can not write log, openpty() failed (/dev/pts not mounted?)
(Reading database ... 9227 files and directories currently installed.)
Preparing to replace gcc-4.6-base 4.6.0-11 (using
.../gcc-4.6-base_4.6.1-1_amd64.deb) ...
Unpacking replacement gcc-4.6-base ...
Can not write log, openpty() failed (/dev/pts not mounted?)
Setting up gcc-4.6-base (4.6.1-1) ...
Can not write log, openpty() failed (/dev/pts not mounted?)
(Reading database ... 9225 files and directories currently installed.)
Preparing to replace libgcc1 1:4.6.0-11 (using
.../libgcc1_1%3a4.6.1-1_amd64.deb) ...
Unpacking replacement libgcc1 ...
Can not write log, openpty() failed (/dev/pts not mounted?)
Setting up libgcc1 (1:4.6.1-1) ...
Can not write log, openpty() failed (/dev/pts not mounted?)
(Reading database ... 9225 files and directories currently installed.)
Preparing to replace libstdc++6 4.6.0-11 (using
.../libstdc++6_4.6.1-1_amd64.deb) ...
Unpacking replacement libstdc++6 ...
Can not write log, openpty() failed (/dev/pts not mounted?)
Setting up libstdc++6 (4.6.1-1) ...
Can not write log, openpty() failed (/dev/pts not mounted?)
Selecting previously deselected package libquadmath0.
(Reading database ... 9225 files and directories currently installed.)
Unpacking libquadmath0 (from .../libquadmath0_4.6.1-1_amd64.deb) ...
Selecting previously deselected package libgfortran3.
Unpacking libgfortran3 (from .../libgfortran3_4.6.1-1_amd64.deb) ...
Selecting previously deselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-3_amd64.deb) ...
Selecting previously deselected package mime-support.
Unpacking mime-support (from .../mime-support_3.51-1_all.deb) ...
Selecting previously deselected package python2.6-minimal.
Unpacking python2.6-minimal (from .../python2.6-minimal_2.6.7-1_amd64.deb) ...
Selecting previously deselected package libdb4.8.
Unpacking libdb4.8 (from .../libdb4.8_4.8.30-8_amd64.deb) ...
Selecting previously deselected package libexpat1.
Unpacking libexpat1 (from .../libexpat1_2.0.1-7_amd64.deb) ...
Selecting previously deselected package python2.6.
Unpacking python2.6 (from .../python2.6_2.6.7-1_amd64.deb) ...
Selecting previously deselected package libboost-system1.42.0.
Unpacking libboost-system1.42.0 (from
.../libboost-system1.42.0_1.42.0-4+b1_amd64.deb) ...
Selecting previously deselected package libboost-thread1.42.0.
Unpacking libboost-thread1.42.0 (from
.../libboost-thread1.42.0_1.42.0-4+b1_amd64.deb) ...
Selecting previously deselected package libfftw3-3.
Unpacking libfftw3-3 (from .../libfftw3-3_3.2.2-1_amd64.deb) ...
Selecting previously deselected package libgsl0ldbl.
Unpacking libgsl0ldbl (from .../libgsl0ldbl_1.15+dfsg-1_amd64.deb) ...
Selecting previously deselected package libpython2.6.
Unpacking libpython2.6 (from .../libpython2.6_2.6.7-1_amd64.deb) ...
Selecting previously deselected package libglib2.0-0.
Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_amd64.deb) ...
Selecting previously deselected package libqtcore4.
Unpacking libqtcore4 (from .../libqtcore4_4%3a4.7.3-4_amd64.deb) ...
Selecting previously deselected package libqt4-sql.
Unpacking libqt4-sql (from .../libqt4-sql_4%3a4.7.3-4_amd64.deb) ...
Selecting previously deselected package libqt4-xml.
Unpacking libqt4-xml (from .../libqt4-xml_4%3a4.7.3-4_amd64.deb) ...
Selecting previously deselected package libball1.3.
Unpacking libball1.3 (from .../libball1.3_1.3.2-2+b2_amd64.deb) ...
Selecting previously deselected package libball1.3-doc.
Unpacking libball1.3-doc (from .../libball1.3-doc_1.3.2-2_all.deb) ...
Selecting previously deselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2-8_amd64.deb) ...
Selecting previously deselected package libicu44.
Unpacking libicu44 (from .../libicu44_4.4.2-2_amd64.deb) ...
Selecting previously deselected package libboost-regex1.42.0.
Unpacking libboost-regex1.42.0 (from
.../libboost-regex1.42.0_1.42.0-4+b1_amd64.deb) ...
Selecting previously deselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_amd64.deb) ...
Selecting previously deselected package libdbus-1-3.
Unpacking libdbus-1-3 (from .../libdbus-1-3_1.4.12-2_amd64.deb) ...
Selecting previously deselected package libqt4-dbus.
Unpacking libqt4-dbus (from .../libqt4-dbus_4%3a4.7.3-4_amd64.deb) ...
Selecting previously deselected package libqt4-network.
Unpacking libqt4-network (from .../libqt4-network_4%3a4.7.3-4_amd64.deb) ...
Selecting previously deselected package libball1.4-data.
Unpacking libball1.4-data (from .../libball1.4-data_1.4.0-1_all.deb) ...
Selecting previously deselected package libball1.4.
Unpacking libball1.4 (from .../libball1.4_1.4.0-1_amd64.deb) ...
Selecting previously deselected package libball1.4-doc.
Unpacking libball1.4-doc (from .../libball1.4-doc_1.4.0-1_all.deb) ...
dpkg: error processing /var/cache/apt/archives/libball1.4-doc_1.4.0-1_all.deb
(--unpack):
trying to overwrite '/usr/share/doc-base/ball-tutorial', which is also in
package libball1.3-doc 1.3.2-2
configured to not write apport reports
dpkg-deb: error: subprocess paste was killed by signal (Broken pipe)
Processing triggers for man-db ...
Errors were encountered while processing:
/var/cache/apt/archives/libball1.4-doc_1.4.0-1_all.deb
E: Sub-process /usr/bin/dpkg returned an error code (1)
cow-shell unlink .ilist: No such file or directory
This is a serious bug as it makes installation fail, and violates
sections 7.6.1 and 10.1 of the policy. An optimal solution would
consist in only one of the packages installing that file, and renaming
or removing the file in the other package. Depending on the
circumstances you might also consider Replace relations or file
diversions. If the conflicting situation cannot be resolved then, as a
last resort, the two packages have to declare a mutual
Conflict. Please take into account that Replaces, Conflicts and
diversions should only be used when packages provide different
implementations for the same functionality.
Here is a list of files that are known to be shared by both packages
(according to the Contents file for sid/amd64, which may be
slightly out of sync):
/usr/share/doc-base/ball-manual
/usr/share/doc-base/ball-tutorial
This bug is assigned to both packages. If you, the maintainers of
the two packages in question, have agreed on which of the packages will
resolve the problem please reassign the bug to that package. You may
also register in the BTS that the other package is affected by the bug.
-Ralf.
PS: for more information about the detection of file overwrite errors
of this kind see http://edos.debian.net/file-overwrites/.
--- End Message ---
--- Begin Message ---
Source: ball
Source-Version: 1.4.0-4
We believe that the bug you reported is fixed in the latest version of
ball, which is due to be installed in the Debian FTP archive:
ball_1.4.0-4.debian.tar.gz
to main/b/ball/ball_1.4.0-4.debian.tar.gz
ball_1.4.0-4.dsc
to main/b/ball/ball_1.4.0-4.dsc
ballview-dbg_1.4.0-4_amd64.deb
to main/b/ball/ballview-dbg_1.4.0-4_amd64.deb
ballview_1.4.0-4_amd64.deb
to main/b/ball/ballview_1.4.0-4_amd64.deb
libball1.4-data_1.4.0-4_all.deb
to main/b/ball/libball1.4-data_1.4.0-4_all.deb
libball1.4-dev_1.4.0-4_amd64.deb
to main/b/ball/libball1.4-dev_1.4.0-4_amd64.deb
libball1.4-doc_1.4.0-4_all.deb
to main/b/ball/libball1.4-doc_1.4.0-4_all.deb
libball1.4_1.4.0-4_amd64.deb
to main/b/ball/libball1.4_1.4.0-4_amd64.deb
libballview1.4-dev_1.4.0-4_amd64.deb
to main/b/ball/libballview1.4-dev_1.4.0-4_amd64.deb
libballview1.4_1.4.0-4_amd64.deb
to main/b/ball/libballview1.4_1.4.0-4_amd64.deb
python-ball_1.4.0-4_amd64.deb
to main/b/ball/python-ball_1.4.0-4_amd64.deb
python-ballview_1.4.0-4_amd64.deb
to main/b/ball/python-ballview_1.4.0-4_amd64.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 631...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Steffen Moeller <moel...@debian.org> (supplier of updated ball package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Fri, 22 Jul 2011 16:41:02 +0200
Source: ball
Binary: libball1.4-data libball1.4 libball1.4-dev libballview1.4
libballview1.4-dev python-ball python-ballview ballview libball1.4-doc
ballview-dbg
Architecture: source all amd64
Version: 1.4.0-4
Distribution: unstable
Urgency: low
Maintainer: Andreas Hildebrandt <ahild...@uni-mainz.de>
Changed-By: Steffen Moeller <moel...@debian.org>
Description:
ballview - free molecular modeling and molecular graphics tool
ballview-dbg - debug symbols for BALL and VIEW libraries
libball1.4 - Biochemical Algorithms Library
libball1.4-data - Biochemical Algorithms Library
libball1.4-dev - Header files for the Biochemical Algorithms Library
libball1.4-doc - documentation for the BALL library
libballview1.4 - Biochemical Algorithms Library, VIEW framework
libballview1.4-dev - Header files for the VIEW part of the Biochemical
Algorithms Libr
python-ball - Python bindings for the Biochemical Algorithms Library
python-ballview - Python bindings for VIEW-parts of the Biochemical Algorithms
Libr
Closes: 598081 631911
Changes:
ball (1.4.0-4) unstable; urgency=low
.
* Documentation packages are in conflict with past version
(Closes: #631911)
* Removed (redundant) conflict of ballview to itself
* Helped quirk in descrition (Closes: #598081)
Checksums-Sha1:
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libball1.4-data_1.4.0-4_all.deb
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libball1.4-doc_1.4.0-4_all.deb
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libball1.4-dev_1.4.0-4_amd64.deb
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libballview1.4-dev_1.4.0-4_amd64.deb
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python-ballview_1.4.0-4_amd64.deb
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ballview-dbg_1.4.0-4_amd64.deb
Checksums-Sha256:
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ball_1.4.0-4.dsc
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libball1.4-data_1.4.0-4_all.deb
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libball1.4-doc_1.4.0-4_all.deb
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libball1.4_1.4.0-4_amd64.deb
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libball1.4-dev_1.4.0-4_amd64.deb
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libballview1.4_1.4.0-4_amd64.deb
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libballview1.4-dev_1.4.0-4_amd64.deb
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python-ball_1.4.0-4_amd64.deb
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python-ballview_1.4.0-4_amd64.deb
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Files:
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libball1.4-data_1.4.0-4_all.deb
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libball1.4-doc_1.4.0-4_all.deb
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libball1.4_1.4.0-4_amd64.deb
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libball1.4-dev_1.4.0-4_amd64.deb
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libballview1.4_1.4.0-4_amd64.deb
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libballview1.4-dev_1.4.0-4_amd64.deb
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python-ball_1.4.0-4_amd64.deb
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python-ballview_1.4.0-4_amd64.deb
8b1a890bda671ba1594a7a5a12116107 2548766 science optional
ballview_1.4.0-4_amd64.deb
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ballview-dbg_1.4.0-4_amd64.deb
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--- End Message ---
