Your message dated Wed, 11 May 2011 20:52:52 +0000
with message-id <e1qkgoq-0006mx...@franck.debian.org>
and subject line Bug#625103: fixed in slicer 3.6.3~svn16592-1
has caused the Debian Bug report #625103,
regarding slicer: FTBFS: itkImageIORegion.h:62:11: error: 'ptrdiff_t' does not
name a type
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
625103: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=625103
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: slicer
Version: 3.6.3~svn16075-2
Severity: serious
Tags: wheezy sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20110502 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part:
> make[3]: Entering directory
> `/build/user-slicer_3.6.3~svn16075-2-amd64-6UXWGE/slicer-3.6.3~svn16075/DEB_build_shared'
> Tcl Wrapping - generating vtkPreciseHyperStreamlinePointsTcl.cxx
> [ 2%] Tcl Wrapping - generating vtkITKArchetypeImageSeriesScalarReaderTcl.cxx
> Tcl Wrapping - generating vtkSeedTractsTcl.cxx
> [ 2%] Tcl Wrapping - generating vtkTensorImplicitFunctionToFunctionSetTcl.cxx
> [ 2%] [ 2%] Tcl Wrapping - generating vtkTensorMaskTcl.cxx
> [ 2%] Tcl Wrapping - generating vtkTensorRotateTcl.cxx
> Building CXX object Libs/FreeSurfer/CMakeFiles/FreeSurfer.dir/vtkFSIO.cxx.o
> In file included from /usr/include/python2.6/Python.h:8:0,
> from
> /build/user-slicer_3.6.3~svn16075-2-amd64-6UXWGE/slicer-3.6.3~svn16075/Libs/LoadableModule/LoadableModuleFactory.cxx:54:
> /usr/include/python2.6/pyconfig.h:1031:0: warning: "_POSIX_C_SOURCE"
> redefined [enabled by default]
> /usr/include/features.h:163:0: note: this is the location of the previous
> definition
> /usr/include/python2.6/pyconfig.h:1040:0: warning: "_XOPEN_SOURCE" redefined
> [enabled by default]
> /usr/include/features.h:165:0: note: this is the location of the previous
> definition
> [ 2%] Tcl Wrapping - generating
> vtkITKArchetypeImageSeriesVectorReaderFileTcl.cxx
> [ 2%] Tcl Wrapping - generating vtkImageLabelCombineTcl.cxx
> [ 2%] Tcl Wrapping - generating
> vtkITKArchetypeImageSeriesVectorReaderSeriesTcl.cxx
> [ 2%] [ 2%] Tcl Wrapping - generating vtkITKImageWriterTcl.cxx
> In file included from /usr/include/InsightToolkit/IO/itkImageIOBase.h:23:0,
> from
> /build/user-slicer_3.6.3~svn16075-2-amd64-6UXWGE/slicer-3.6.3~svn16075/Libs/ITKCommandIO/itkCommandIO.h:23,
> from
> /build/user-slicer_3.6.3~svn16075-2-amd64-6UXWGE/slicer-3.6.3~svn16075/Libs/ITKCommandIO/itkCommandIO.cxx:19:
> /usr/include/InsightToolkit/IO/itkImageIORegion.h:62:11: error: 'ptrdiff_t'
> does not name a type
> /usr/include/InsightToolkit/IO/itkImageIORegion.h:63:11: error: 'ptrdiff_t'
> does not name a type
> /usr/include/InsightToolkit/IO/itkImageIORegion.h:67:23: error:
> 'IndexValueType' was not declared in this scope
> /usr/include/InsightToolkit/IO/itkImageIORegion.h:67:37: error: template
> argument 1 is invalid
> /usr/include/InsightToolkit/IO/itkImageIORegion.h:67:37: error: template
> argument 2 is invalid
> /usr/include/InsightToolkit/IO/itkImageIORegion.h:126:3: error:
> 'IndexValueType' does not name a type
> /usr/include/InsightToolkit/IO/itkImageIORegion.h:128:40: error:
> 'IndexValueType' has not been declared
> In file included from /usr/include/InsightToolkit/IO/itkImageIOBase.h:23:0,
> from
> /build/user-slicer_3.6.3~svn16075-2-amd64-6UXWGE/slicer-3.6.3~svn16075/Libs/ITKCommandIO/itkCommandIO.h:23,
> from
> /build/user-slicer_3.6.3~svn16075-2-amd64-6UXWGE/slicer-3.6.3~svn16075/Libs/ITKCommandIO/itkCommandIO.cxx:19:
> /usr/include/InsightToolkit/IO/itkImageIORegion.h: In static member function
> 'static void itk::ImageIORegionAdaptor<VDimension>::Convert(const
> ImageIORegionType&, itk::ImageIORegionAdaptor<VDimension>::ImageRegionType&,
> const ImageIndexType&)':
> /usr/include/InsightToolkit/IO/itkImageIORegion.h:238:39: error: no matching
> function for call to 'itk::ImageIORegion::GetIndex(unsigned int&) const'
> /usr/include/InsightToolkit/IO/itkImageIORegion.h:238:39: note: candidate is:
> /usr/include/InsightToolkit/IO/itkImageIORegion.h:113:21: note: const
> IndexType& itk::ImageIORegion::GetIndex() const
> /usr/include/InsightToolkit/IO/itkImageIORegion.h:113:21: note: candidate
> expects 0 arguments, 1 provided
> Building CXX object
> Libs/SlicerExecutionModel/ModuleDescriptionParser/CMakeFiles/ModuleDescriptionParser.dir/ModuleParameterGroup.cxx.o
> In file included from /usr/include/InsightToolkit/IO/itkImageIOBase.h:23:0,
> from
> /build/user-slicer_3.6.3~svn16075-2-amd64-6UXWGE/slicer-3.6.3~svn16075/Libs/MGHImageIO/itkMGHImageIO.h:9,
> from
> /build/user-slicer_3.6.3~svn16075-2-amd64-6UXWGE/slicer-3.6.3~svn16075/Libs/MGHImageIO/itkMGHImageIO.cxx:4:
> /usr/include/InsightToolkit/IO/itkImageIORegion.h:62:11: error: 'ptrdiff_t'
> does not name a type
> /usr/include/InsightToolkit/IO/itkImageIORegion.h:63:11: error: 'ptrdiff_t'
> does not name a type
> /usr/include/InsightToolkit/IO/itkImageIORegion.h:67:23: error:
> 'IndexValueType' was not declared in this scope
> /usr/include/InsightToolkit/IO/itkImageIORegion.h:67:37: error: template
> argument 1 is invalid
> /usr/include/InsightToolkit/IO/itkImageIORegion.h:67:37: error: template
> argument 2 is invalid
> /usr/include/InsightToolkit/IO/itkImageIORegion.h:126:3: error:
> 'IndexValueType' does not name a type
> /usr/include/InsightToolkit/IO/itkImageIORegion.h:128:40: error:
> 'IndexValueType' has not been declared
> In file included from /usr/include/InsightToolkit/IO/itkImageIOBase.h:23:0,
> from
> /build/user-slicer_3.6.3~svn16075-2-amd64-6UXWGE/slicer-3.6.3~svn16075/Libs/MGHImageIO/itkMGHImageIO.h:9,
> from
> /build/user-slicer_3.6.3~svn16075-2-amd64-6UXWGE/slicer-3.6.3~svn16075/Libs/MGHImageIO/itkMGHImageIO.cxx:4:
> /usr/include/InsightToolkit/IO/itkImageIORegion.h: In static member function
> 'static void itk::ImageIORegionAdaptor<VDimension>::Convert(const
> ImageIORegionType&, itk::ImageIORegionAdaptor<VDimension>::ImageRegionType&,
> const ImageIndexType&)':
> /usr/include/InsightToolkit/IO/itkImageIORegion.h:238:39: error: no matching
> function for call to 'itk::ImageIORegion::GetIndex(unsigned int&) const'
> /usr/include/InsightToolkit/IO/itkImageIORegion.h:238:39: note: candidate is:
> /usr/include/InsightToolkit/IO/itkImageIORegion.h:113:21: note: const
> IndexType& itk::ImageIORegion::GetIndex() const
> /usr/include/InsightToolkit/IO/itkImageIORegion.h:113:21: note: candidate
> expects 0 arguments, 1 provided
> [ 2%] Building CXX object
> Libs/SlicerExecutionModel/ModuleDescriptionParser/CMakeFiles/ModuleDescriptionParser.dir/ModuleDescriptionUtilities.cxx.o
> [ 2%] Tcl Wrapping - generating
> vtkITKGradientAnisotropicDiffusionImageFilterTcl.cxx
> [ 2%] Tcl Wrapping - generating vtkITKDistanceTransformTcl.cxx
> [ 2%] Tcl Wrapping - generating vtkITKLevelTracingImageFilterTcl.cxx
> [ 2%] Tcl Wrapping - generating vtkITKLevelTracing3DImageFilterTcl.cxx
> [ 2%] Tcl Wrapping - generating vtkITKWandImageFilterTcl.cxx
> [ 2%] Tcl Wrapping - generating vtkITKNewOtsuThresholdImageFilterTcl.cxx
> [ 2%] Tcl Wrapping - generating vtkITKBSplineTransformTcl.cxx
> [ 2%] Tcl Wrapping - generating vtkITKTimeSeriesDatabaseTcl.cxx
> [ 2%] Tcl Wrapping - generating vtkITKIslandMathTcl.cxx
> /build/user-slicer_3.6.3~svn16075-2-amd64-6UXWGE/slicer-3.6.3~svn16075/Libs/LoadableModule/LoadableModuleFactory.cxx:
> In member function 'virtual long int
> LoadableModuleFactory::ScanForSharedObjectModules()':
> /build/user-slicer_3.6.3~svn16075-2-amd64-6UXWGE/slicer-3.6.3~svn16075/Libs/LoadableModule/LoadableModuleFactory.cxx:378:12:
> warning: variable 'isAPlugin' set but not used [-Wunused-but-set-variable]
> [ 2%] Scanning dependencies of target vtkTeem
> make[3]: Leaving directory
> `/build/user-slicer_3.6.3~svn16075-2-amd64-6UXWGE/slicer-3.6.3~svn16075/DEB_build_shared'
> Building CXX object
> Libs/FreeSurfer/CMakeFiles/FreeSurfer.dir/vtkFSSurfaceReader.cxx.o
> make[3]: Entering directory
> `/build/user-slicer_3.6.3~svn16075-2-amd64-6UXWGE/slicer-3.6.3~svn16075/DEB_build_shared'
> make[3]: *** [Libs/ITKCommandIO/CMakeFiles/CommandIO.dir/itkCommandIO.cxx.o]
> Error 1
The full build log is available from:
http://people.debian.org/~lucas/logs/2011/05/02/slicer_3.6.3~svn16075-2_lsid64.buildlog
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot. Internet was not
accessible from the build systems.
--
| Lucas Nussbaum
| lu...@lucas-nussbaum.net http://www.lucas-nussbaum.net/ |
| jabber: lu...@nussbaum.fr GPG: 1024D/023B3F4F |
--- End Message ---
--- Begin Message ---
Source: slicer
Source-Version: 3.6.3~svn16592-1
We believe that the bug you reported is fixed in the latest version of
slicer, which is due to be installed in the Debian FTP archive:
libslicer3-dev_3.6.3~svn16592-1_amd64.deb
to main/s/slicer/libslicer3-dev_3.6.3~svn16592-1_amd64.deb
libslicer3_3.6.3~svn16592-1_amd64.deb
to main/s/slicer/libslicer3_3.6.3~svn16592-1_amd64.deb
slicer-data_3.6.3~svn16592-1_all.deb
to main/s/slicer/slicer-data_3.6.3~svn16592-1_all.deb
slicer_3.6.3~svn16592-1.debian.tar.gz
to main/s/slicer/slicer_3.6.3~svn16592-1.debian.tar.gz
slicer_3.6.3~svn16592-1.dsc
to main/s/slicer/slicer_3.6.3~svn16592-1.dsc
slicer_3.6.3~svn16592-1_amd64.deb
to main/s/slicer/slicer_3.6.3~svn16592-1_amd64.deb
slicer_3.6.3~svn16592.orig.tar.gz
to main/s/slicer/slicer_3.6.3~svn16592.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 625...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Dominique Belhachemi <domi...@debian.org> (supplier of updated slicer package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Mon, 09 May 2011 21:02:12 -0400
Source: slicer
Binary: slicer libslicer3 libslicer3-dev slicer-data
Architecture: source all amd64
Version: 3.6.3~svn16592-1
Distribution: unstable
Urgency: low
Maintainer: Debian Science Team
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Dominique Belhachemi <domi...@debian.org>
Description:
libslicer3 - software package for visualization and image analysis - runtime
libslicer3-dev - software package for visualization and image analysis -
developme
slicer - software package for visualization and image analysis - main appl
slicer-data - software package for visualization and image analysis - share
Closes: 625103
Changes:
slicer (3.6.3~svn16592-1) unstable; urgency=low
.
* New upstream snapshot
* Switched to CDBS
* Include <stddef.h> to ensure ptrdiff_t is defined. (Closes: #625103)
* Set -DBUILD_BRAINSTOOLS:BOOL=ON
* Removed modules under development
* Changed menu section to Education;Science;MedicalSoftware;
* Bump compat level to 8
* Bump Standards-Version: 3.9.2
Checksums-Sha1:
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slicer_3.6.3~svn16592.orig.tar.gz
43a3c9a95ab787bf0f61503491630a40b0117a5c 48736
slicer_3.6.3~svn16592-1.debian.tar.gz
494d46f22adf06c4ff67c57aeaaf65edb823ebab 52719204
slicer-data_3.6.3~svn16592-1_all.deb
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slicer_3.6.3~svn16592-1_amd64.deb
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libslicer3_3.6.3~svn16592-1_amd64.deb
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libslicer3-dev_3.6.3~svn16592-1_amd64.deb
Checksums-Sha256:
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slicer_3.6.3~svn16592-1.dsc
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slicer_3.6.3~svn16592.orig.tar.gz
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slicer_3.6.3~svn16592-1_amd64.deb
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libslicer3_3.6.3~svn16592-1_amd64.deb
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libslicer3-dev_3.6.3~svn16592-1_amd64.deb
Files:
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slicer_3.6.3~svn16592-1.dsc
8beb86162744a2dfdbffab5746ceac00 146635229 graphics optional
slicer_3.6.3~svn16592.orig.tar.gz
70d357f3c34b2882a5400253a3556f41 48736 graphics optional
slicer_3.6.3~svn16592-1.debian.tar.gz
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slicer-data_3.6.3~svn16592-1_all.deb
2a9bdd11733457c391efd512f30c754f 5450154 graphics optional
slicer_3.6.3~svn16592-1_amd64.deb
f3331bffe4ea2f664c124a66d36b4208 27689570 libs optional
libslicer3_3.6.3~svn16592-1_amd64.deb
90c0dbb9ab57c0c318969863bac32e88 634022 libdevel optional
libslicer3-dev_3.6.3~svn16592-1_amd64.deb
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--- End Message ---
