Your message dated Sun, 13 Mar 2011 21:47:56 +0000
with message-id <e1pyt8m-0007f2...@franck.debian.org>
and subject line Bug#618057: fixed in dialign 2.2.1-5
has caused the Debian Bug report #618057,
regarding dialign: FTBFS: dialign.c:345: undefined reference to `para_read'
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
618057: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=618057
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: dialign
Version: 2.2.1-4
Severity: serious
Tags: wheezy sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20110313 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part:
> gcc -g -O2 -g -O2 dialign.c
> /tmp/cc7u3cW4.o: In function `main':
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:345:
> undefined reference to `para_read'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:389:
> undefined reference to `seq_read'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:489:
> undefined reference to `seq_shift'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:545:
> undefined reference to `matrix_read'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:547:
> undefined reference to `mem_alloc'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:629:
> undefined reference to `tp400_read'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:736:
> undefined reference to `newAligGraphClosure'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:787:
> undefined reference to `translate'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:791:
> undefined reference to `translate'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:794:
> undefined reference to `invert'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:795:
> undefined reference to `invert'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:796:
> undefined reference to `invert'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:798:
> undefined reference to `translate'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:1150:
> undefined reference to `ow_bubble_sort'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:1176:
> undefined reference to `filter'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:1190:
> undefined reference to `print_log'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:1193:
> undefined reference to `print_fragments'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:1195:
> undefined reference to `throw_out'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:1197:
> undefined reference to `sel_test'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:867:
> undefined reference to `bubble_sort'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:880:
> undefined reference to `filter'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:968:
> undefined reference to `para_print'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:1144:
> undefined reference to `ow_add'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:1047:
> undefined reference to `frag_chain'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:1152:
> undefined reference to `frag_sort'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:1158:
> undefined reference to `bubble_sort'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:1160:
> undefined reference to `frag_sort'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:1226:
> undefined reference to `av_tree_print'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:1234:
> undefined reference to `subst_mat'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:1239:
> undefined reference to `ali_arrange'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:869:
> undefined reference to `frag_sort'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:392:
> undefined reference to `regex_parse'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:487:
> undefined reference to `seq_parse'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:627:
> undefined reference to `tp400_read'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:625:
> undefined reference to `tp400_read'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:596:
> undefined reference to `multi_anc_read'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:619:
> undefined reference to `exclude_frg_read'
> collect2: ld returned 1 exit status
The full build log is available from:
http://people.debian.org/~lucas/logs/2011/03/13/dialign_2.2.1-4_lsid64.buildlog
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot. Internet was not
accessible from the build systems.
--
| Lucas Nussbaum
| lu...@lucas-nussbaum.net http://www.lucas-nussbaum.net/ |
| jabber: lu...@nussbaum.fr GPG: 1024D/023B3F4F |
--- End Message ---
--- Begin Message ---
Source: dialign
Source-Version: 2.2.1-5
We believe that the bug you reported is fixed in the latest version of
dialign, which is due to be installed in the Debian FTP archive:
dialign_2.2.1-5.debian.tar.gz
to main/d/dialign/dialign_2.2.1-5.debian.tar.gz
dialign_2.2.1-5.dsc
to main/d/dialign/dialign_2.2.1-5.dsc
dialign_2.2.1-5_amd64.deb
to main/d/dialign/dialign_2.2.1-5_amd64.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 618...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated dialign package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Sun, 13 Mar 2011 18:36:43 +0100
Source: dialign
Binary: dialign
Architecture: source amd64
Version: 2.2.1-5
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
dialign - Segment-based multiple sequence alignment
Closes: 618057
Changes:
dialign (2.2.1-5) unstable; urgency=low
.
* Fix FTBFS which is caused by cdbs which is abandoning DEB_OPT_FLAG
Just switch to dh
Closes: #618057
* Debhelper 8
Checksums-Sha1:
179e63651429fa1d91bf8c55841eea9f7a35f68a 1333 dialign_2.2.1-5.dsc
f085c69be45c2daa40b2ed23a3a594dfe6c91ea8 10379 dialign_2.2.1-5.debian.tar.gz
6fa13da8f84af2ccc3acfe71d79b99f72e86f5a4 204728 dialign_2.2.1-5_amd64.deb
Checksums-Sha256:
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dialign_2.2.1-5.dsc
10ca37c240daece751e66ce640e09f329dd3c0d25d2dfc4e39d5507d83a5d9d3 10379
dialign_2.2.1-5.debian.tar.gz
2746c113ac9e42e8d97aee850f40142dfdaa9689a6a9aad2e59ad8f9913e4514 204728
dialign_2.2.1-5_amd64.deb
Files:
545deb57a77c4cea436ec6ed9a565e82 1333 science optional dialign_2.2.1-5.dsc
dc7ed3934c1e83a219650ed3ac1ea3c3 10379 science optional
dialign_2.2.1-5.debian.tar.gz
eda73ea9c16480e1b4dfb1d002f270fd 204728 science optional
dialign_2.2.1-5_amd64.deb
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--- End Message ---
