Your message dated Wed, 12 Jan 2011 15:18:31 +0000
with message-id <e1pd2t1-0004mr...@franck.debian.org>
and subject line Bug#608655: fixed in scotch 5.1.11.dfsg-3
has caused the Debian Bug report #608655,
regarding scotch and gbase: error when trying to install together
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
608655: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=608655
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: gbase,scotch
Version: gbase/0.5-2.2
Version: scotch/5.1.11.dfsg-1
Severity: serious
User: trei...@debian.org
Usertags: edos-file-overwrite

Date: 2011-01-02
Architecture: amd64
Distribution: sid

Hi,

automatic installation tests of packages that share a file and at the
same time do not conflict by their package dependency relationships has
detected the following problem:


WARNING: The following packages cannot be authenticated!
  libmagic1 file libgpg-error0 libgcrypt11 libtasn1-3 libgnutls26 libkeyutils1
  libkrb5support0 libk5crypto3 libkrb5-3 libgssapi-krb5-2 libpcre3 libxml2 ucf
  defoma libexpat1 libfreetype6 ttf-dejavu-core fontconfig-config
  libfontconfig1 fontconfig libglib2.0-0 libatk1.0-0 libpixman-1-0 libpng12-0
  libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxcb-render0
  libxcb-render-util0 libxrender1 libcairo2 libgtk2.0-common
  libavahi-common-data libavahi-common3 libdbus-1-3 libavahi-client3 libcups2
  libjpeg62 libjasper1 libpango1.0-common libdatrie1 libthai-data libthai0
  libxft2 libpango1.0-0 libtiff4 libxcomposite1 libxfixes3 libxcursor1
  libxdamage1 libxext6 libxi6 libxinerama1 libxrandr2 shared-mime-info
  libgtk2.0-0 gbase libscotch-5.1 scotch

Extracting templates from packages: 48%
Extracting templates from packages: 96%
Extracting templates from packages: 100%
Preconfiguring packages ...
Authentication warning overridden.
Can not write log, openpty() failed (/dev/pts not mounted?)
Selecting previously deselected package libmagic1.
(Reading database ... 8688 files and directories currently installed.)
Unpacking libmagic1 (from .../libmagic1_5.04-5_amd64.deb) ...
Selecting previously deselected package file.
Unpacking file (from .../archives/file_5.04-5_amd64.deb) ...
Selecting previously deselected package libgpg-error0.
Unpacking libgpg-error0 (from .../libgpg-error0_1.6-1_amd64.deb) ...
Selecting previously deselected package libgcrypt11.
Unpacking libgcrypt11 (from .../libgcrypt11_1.4.5-2_amd64.deb) ...
Selecting previously deselected package libtasn1-3.
Unpacking libtasn1-3 (from .../libtasn1-3_2.7-1_amd64.deb) ...
Selecting previously deselected package libgnutls26.
Unpacking libgnutls26 (from .../libgnutls26_2.8.6-1_amd64.deb) ...
Selecting previously deselected package libkeyutils1.
Unpacking libkeyutils1 (from .../libkeyutils1_1.4-1_amd64.deb) ...
Selecting previously deselected package libkrb5support0.
Unpacking libkrb5support0 (from .../libkrb5support0_1.8.3+dfsg-4_amd64.deb) ...
Selecting previously deselected package libk5crypto3.
Unpacking libk5crypto3 (from .../libk5crypto3_1.8.3+dfsg-4_amd64.deb) ...
Selecting previously deselected package libkrb5-3.
Unpacking libkrb5-3 (from .../libkrb5-3_1.8.3+dfsg-4_amd64.deb) ...
Selecting previously deselected package libgssapi-krb5-2.
Unpacking libgssapi-krb5-2 (from .../libgssapi-krb5-2_1.8.3+dfsg-4_amd64.deb) 
...
Selecting previously deselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.02-1.1_amd64.deb) ...
Selecting previously deselected package libxml2.
Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_amd64.deb) ...
Selecting previously deselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu1_all.deb) ...
Moving old data out of the way
Selecting previously deselected package defoma.
Unpacking defoma (from .../defoma_0.11.12_all.deb) ...
Selecting previously deselected package libexpat1.
Unpacking libexpat1 (from .../libexpat1_2.0.1-7_amd64.deb) ...
Selecting previously deselected package libfreetype6.
Unpacking libfreetype6 (from .../libfreetype6_2.4.2-2.1_amd64.deb) ...
Selecting previously deselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.31-1_all.deb) ...
Selecting previously deselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.1_all.deb) ...
Selecting previously deselected package libfontconfig1.
Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.1_amd64.deb) ...
Selecting previously deselected package fontconfig.
Unpacking fontconfig (from .../fontconfig_2.8.0-2.1_amd64.deb) ...
Selecting previously deselected package libglib2.0-0.
Unpacking libglib2.0-0 (from .../libglib2.0-0_2.24.2-1_amd64.deb) ...
Selecting previously deselected package libatk1.0-0.
Unpacking libatk1.0-0 (from .../libatk1.0-0_1.30.0-1_amd64.deb) ...
Selecting previously deselected package libpixman-1-0.
Unpacking libpixman-1-0 (from .../libpixman-1-0_0.16.4-1_amd64.deb) ...
Selecting previously deselected package libpng12-0.
Unpacking libpng12-0 (from .../libpng12-0_1.2.44-1_amd64.deb) ...
Selecting previously deselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_amd64.deb) ...
Selecting previously deselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_amd64.deb) ...
Selecting previously deselected package libxcb1.
Unpacking libxcb1 (from .../libxcb1_1.6-1_amd64.deb) ...
Selecting previously deselected package libx11-data.
Unpacking libx11-data (from .../libx11-data_2%3a1.3.3-4_all.deb) ...
Selecting previously deselected package libx11-6.
Unpacking libx11-6 (from .../libx11-6_2%3a1.3.3-4_amd64.deb) ...
Selecting previously deselected package libxcb-render0.
Unpacking libxcb-render0 (from .../libxcb-render0_1.6-1_amd64.deb) ...
Selecting previously deselected package libxcb-render-util0.
Unpacking libxcb-render-util0 (from .../libxcb-render-util0_0.3.6-1_amd64.deb) 
...
Selecting previously deselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_amd64.deb) ...
Selecting previously deselected package libcairo2.
Unpacking libcairo2 (from .../libcairo2_1.8.10-6_amd64.deb) ...
Selecting previously deselected package libgtk2.0-common.
Unpacking libgtk2.0-common (from .../libgtk2.0-common_2.20.1-2_all.deb) ...
Selecting previously deselected package libavahi-common-data.
Unpacking libavahi-common-data (from 
.../libavahi-common-data_0.6.27-3_amd64.deb) ...
Selecting previously deselected package libavahi-common3.
Unpacking libavahi-common3 (from .../libavahi-common3_0.6.27-3_amd64.deb) ...
Selecting previously deselected package libdbus-1-3.
Unpacking libdbus-1-3 (from .../libdbus-1-3_1.2.24-4_amd64.deb) ...
Selecting previously deselected package libavahi-client3.
Unpacking libavahi-client3 (from .../libavahi-client3_0.6.27-3_amd64.deb) ...
Selecting previously deselected package libcups2.
Unpacking libcups2 (from .../libcups2_1.4.5-1_amd64.deb) ...
Selecting previously deselected package libjpeg62.
Unpacking libjpeg62 (from .../libjpeg62_6b1-1_amd64.deb) ...
Selecting previously deselected package libjasper1.
Unpacking libjasper1 (from .../libjasper1_1.900.1-7+b1_amd64.deb) ...
Selecting previously deselected package libpango1.0-common.
Unpacking libpango1.0-common (from .../libpango1.0-common_1.28.3-1_all.deb) ...
Selecting previously deselected package libdatrie1.
Unpacking libdatrie1 (from .../libdatrie1_0.2.4-1_amd64.deb) ...
Selecting previously deselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.14-2_all.deb) ...
Selecting previously deselected package libthai0.
Unpacking libthai0 (from .../libthai0_0.1.14-2_amd64.deb) ...
Selecting previously deselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.1.14-2_amd64.deb) ...
Selecting previously deselected package libpango1.0-0.
Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-1_amd64.deb) ...
Selecting previously deselected package libtiff4.
Unpacking libtiff4 (from .../libtiff4_3.9.4-5_amd64.deb) ...
Selecting previously deselected package libxcomposite1.
Unpacking libxcomposite1 (from .../libxcomposite1_1%3a0.4.3-1_amd64.deb) ...
Selecting previously deselected package libxfixes3.
Unpacking libxfixes3 (from .../libxfixes3_1%3a4.0.5-1_amd64.deb) ...
Selecting previously deselected package libxcursor1.
Unpacking libxcursor1 (from .../libxcursor1_1%3a1.1.11-1_amd64.deb) ...
Selecting previously deselected package libxdamage1.
Unpacking libxdamage1 (from .../libxdamage1_1%3a1.1.3-1_amd64.deb) ...
Selecting previously deselected package libxext6.
Unpacking libxext6 (from .../libxext6_2%3a1.1.2-1_amd64.deb) ...
Selecting previously deselected package libxi6.
Unpacking libxi6 (from .../libxi6_2%3a1.3-6_amd64.deb) ...
Selecting previously deselected package libxinerama1.
Unpacking libxinerama1 (from .../libxinerama1_2%3a1.1.1-1_amd64.deb) ...
Selecting previously deselected package libxrandr2.
Unpacking libxrandr2 (from .../libxrandr2_2%3a1.3.1-1_amd64.deb) ...
Selecting previously deselected package shared-mime-info.
Unpacking shared-mime-info (from .../shared-mime-info_0.71-4_amd64.deb) ...
Selecting previously deselected package libgtk2.0-0.
Unpacking libgtk2.0-0 (from .../libgtk2.0-0_2.20.1-2_amd64.deb) ...
Selecting previously deselected package gbase.
Unpacking gbase (from .../gbase_0.5-2.2_amd64.deb) ...
Selecting previously deselected package libscotch-5.1.
Unpacking libscotch-5.1 (from .../libscotch-5.1_5.1.11.dfsg-1_amd64.deb) ...
Selecting previously deselected package scotch.
Unpacking scotch (from .../scotch_5.1.11.dfsg-1_amd64.deb) ...
dpkg: error processing /var/cache/apt/archives/scotch_5.1.11.dfsg-1_amd64.deb 
(--unpack):
 trying to overwrite '/usr/share/man/man1/gbase.1.gz', which is also in package 
gbase 0.5-2.2
configured to not write apport reports
Processing triggers for man-db ...
Errors were encountered while processing:
 /var/cache/apt/archives/scotch_5.1.11.dfsg-1_amd64.deb
E: Sub-process /usr/bin/dpkg returned an error code (1)


This is a serious bug as it makes installation fail, and violates
sections 7.6.1 and 10.1 of the policy. An optimal solution would
consist in only one of the packages installing that file, and renaming
or removing the file in the other package. Depending on the
circumstances you might also consider Replace relations or file
diversions. If the conflicting situation cannot be resolved then, as a
last resort, the two packages have to declare a mutual
Conflict. Please take into account that Replaces, Conflicts and
diversions should only be used when packages provide different
implementations for the same functionality.

Here is a list of files that are known to be shared by both packages
(according to the Contents file for sid/amd64, which may be
slightly out of sync):

  /usr/bin/gbase
  /usr/share/man/man1/gbase.1.gz

This bug is assigned to both packages. If you, the maintainers of
the two packages in question, have agreed on which of the packages will
resolve the problem please reassign the bug to that package. You may
also register in the BTS that the other package is affected by the bug.

-Ralf.

PS: for more information about the detection of file overwrite errors
of this kind see http://edos.debian.net/file-overwrites/.



--- End Message ---
--- Begin Message ---
Source: scotch
Source-Version: 5.1.11.dfsg-3

We believe that the bug you reported is fixed in the latest version of
scotch, which is due to be installed in the Debian FTP archive:

libptscotch-5.1_5.1.11.dfsg-3_amd64.deb
  to main/s/scotch/libptscotch-5.1_5.1.11.dfsg-3_amd64.deb
libptscotch-dbg_5.1.11.dfsg-3_amd64.deb
  to main/s/scotch/libptscotch-dbg_5.1.11.dfsg-3_amd64.deb
libptscotch-dev_5.1.11.dfsg-3_amd64.deb
  to main/s/scotch/libptscotch-dev_5.1.11.dfsg-3_amd64.deb
libscotch-5.1_5.1.11.dfsg-3_amd64.deb
  to main/s/scotch/libscotch-5.1_5.1.11.dfsg-3_amd64.deb
libscotch-dbg_5.1.11.dfsg-3_amd64.deb
  to main/s/scotch/libscotch-dbg_5.1.11.dfsg-3_amd64.deb
libscotch-dev_5.1.11.dfsg-3_amd64.deb
  to main/s/scotch/libscotch-dev_5.1.11.dfsg-3_amd64.deb
libscotchmetis-dev_5.1.11.dfsg-3_amd64.deb
  to main/s/scotch/libscotchmetis-dev_5.1.11.dfsg-3_amd64.deb
libscotchparmetis-dev_5.1.11.dfsg-3_amd64.deb
  to main/s/scotch/libscotchparmetis-dev_5.1.11.dfsg-3_amd64.deb
ptscotch-dbg_5.1.11.dfsg-3_amd64.deb
  to main/s/scotch/ptscotch-dbg_5.1.11.dfsg-3_amd64.deb
ptscotch_5.1.11.dfsg-3_amd64.deb
  to main/s/scotch/ptscotch_5.1.11.dfsg-3_amd64.deb
scotch-dbg_5.1.11.dfsg-3_amd64.deb
  to main/s/scotch/scotch-dbg_5.1.11.dfsg-3_amd64.deb
scotch_5.1.11.dfsg-3.debian.tar.gz
  to main/s/scotch/scotch_5.1.11.dfsg-3.debian.tar.gz
scotch_5.1.11.dfsg-3.dsc
  to main/s/scotch/scotch_5.1.11.dfsg-3.dsc
scotch_5.1.11.dfsg-3_amd64.deb
  to main/s/scotch/scotch_5.1.11.dfsg-3_amd64.deb



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 608...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
"Adam C. Powell, IV" <hazel...@debian.org> (supplier of updated scotch package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Format: 1.8
Date: Wed, 12 Jan 2011 09:46:31 -0500
Source: scotch
Binary: scotch ptscotch libscotch-dev libptscotch-dev scotch-dbg ptscotch-dbg 
libscotch-dbg libptscotch-dbg libscotchmetis-dev libscotchparmetis-dev 
libscotch-5.1 libptscotch-5.1
Architecture: source amd64
Version: 5.1.11.dfsg-3
Distribution: unstable
Urgency: low
Maintainer: Debian Science Maintainers 
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: "Adam C. Powell, IV" <hazel...@debian.org>
Description: 
 libptscotch-5.1 - MPI programs and libraries for graph, mesh and hypergraph 
partiti
 libptscotch-dbg - MPI programs and libraries for graph, mesh and hypergraph 
partiti
 libptscotch-dev - MPI programs and libraries for graph, mesh and hypergraph 
partiti
 libscotch-5.1 - programs and libraries for graph, mesh and hypergraph 
partitionin
 libscotch-dbg - programs and libraries for graph, mesh and hypergraph 
partitionin
 libscotch-dev - programs and libraries for graph, mesh and hypergraph 
partitionin
 libscotchmetis-dev - programs and libraries for graph, mesh and hypergraph 
partitionin
 libscotchparmetis-dev - programs and libraries for graph, mesh and hypergraph 
partitionin
 ptscotch   - MPI programs and libraries for graph, mesh and hypergraph partiti
 ptscotch-dbg - MPI programs and libraries for graph, mesh and hypergraph 
partiti
 scotch     - programs and libraries for graph, mesh and hypergraph partitionin
 scotch-dbg - programs and libraries for graph, mesh and hypergraph partitionin
Closes: 608655 609208
Changes: 
 scotch (5.1.11.dfsg-3) unstable; urgency=low
 .
   * Removed gbase conflict and renamed gbase to scotch_gbase (closes: #608655).
   * Eliminated extra clean target deps to avoid unnecessary recompilation.
   * Added LD_LIBRARY_PATH to link binaries with linked libs (closes: #609208).
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