Your message dated Mon, 25 Oct 2010 00:02:08 +0000
with message-id <e1paavs-00072k...@franck.debian.org>
and subject line Bug#594860: fixed in hmmer 3.0-3
has caused the Debian Bug report #594860,
regarding hmmer: FTBFS (powerpc): altivec and cast errors
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
594860: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=594860
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: hmmer
Version: 3.0-2
Severity: serious
>
> sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on porpora.debian.org
>
> ╔══════════════════════════════════════════════════════════════════════════════╗
> ║ hmmer 3.0-2 (powerpc) 29 Aug 2010
> 18:06 ║
> ╚══════════════════════════════════════════════════════════════════════════════╝
[...]
> gcc -std=gnu99 -I. -I. -g -O2 -g -Wall -O2 -pthread -maltivec -mabi=altivec
> -o esl_vmx.o -c esl_vmx.c
> In file included from esl_vmx.c:38:
> esl_vmx.h: In function 'esl_vmx_set_float':
> esl_vmx.h:30: warning: implicit declaration of function 'vec_lde'
> esl_vmx.h:30: error: incompatible types when assigning to type '__vector
> float' from type 'int'
> esl_vmx.h:31: warning: implicit declaration of function 'vec_lvsl'
> esl_vmx.h:31: error: incompatible types when assigning to type '__vector
> unsigned char' from type 'int'
> esl_vmx.h:32: warning: implicit declaration of function 'vec_perm'
> esl_vmx.h:32: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:33: warning: implicit declaration of function 'vec_splat'
> esl_vmx.h:33: error: AltiVec argument passed to unprototyped function
> esl_vmx.h: In function 'esl_vmx_set_s16':
> esl_vmx.h:48: error: incompatible types when assigning to type '__vector
> signed short' from type 'int'
> esl_vmx.h:49: error: incompatible types when assigning to type '__vector
> unsigned char' from type 'int'
> esl_vmx.h:50: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:51: error: AltiVec argument passed to unprototyped function
> esl_vmx.h: In function 'esl_vmx_set_u8':
> esl_vmx.h:66: error: incompatible types when assigning to type '__vector
> unsigned char' from type 'int'
> esl_vmx.h:67: error: incompatible types when assigning to type '__vector
> unsigned char' from type 'int'
> esl_vmx.h:68: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:69: error: AltiVec argument passed to unprototyped function
> esl_vmx.h: In function 'esl_vmx_hsum_float':
> esl_vmx.h:83: warning: implicit declaration of function 'vec_add'
> esl_vmx.h:83: warning: implicit declaration of function 'vec_sld'
> esl_vmx.h:83: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:83: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:84: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:84: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:85: warning: implicit declaration of function 'vec_ste'
> esl_vmx.h:85: error: AltiVec argument passed to unprototyped function
> esl_vmx.h: In function 'esl_vmx_hsum_s16':
> esl_vmx.h:100: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:100: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:101: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:101: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:102: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:102: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:103: error: AltiVec argument passed to unprototyped function
> esl_vmx.h: In function 'esl_vmx_hmax_float':
> esl_vmx.h:118: warning: implicit declaration of function 'vec_max'
> esl_vmx.h:118: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:118: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:119: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:119: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:120: error: AltiVec argument passed to unprototyped function
> esl_vmx.h: In function 'esl_vmx_hmax_s16':
> esl_vmx.h:135: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:135: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:136: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:136: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:137: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:137: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:138: error: AltiVec argument passed to unprototyped function
> esl_vmx.h: In function 'esl_vmx_hmax_u8':
> esl_vmx.h:153: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:153: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:154: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:154: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:155: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:155: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:156: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:156: error: AltiVec argument passed to unprototyped function
> esl_vmx.h:157: error: AltiVec argument passed to unprototyped function
> esl_vmx.c: In function 'esl_vmx_logf':
> esl_vmx.c:92: warning: implicit declaration of function 'vec_splat_u32'
> esl_vmx.c:92: error: can't convert between vector values of different size
> esl_vmx.c:96: warning: implicit declaration of function 'vec_sr'
> esl_vmx.c:96: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:98: warning: implicit declaration of function 'vec_cmple'
> esl_vmx.c:98: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:99: warning: implicit declaration of function 'vec_cmpeq'
> esl_vmx.c:99: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:100: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:103: warning: implicit declaration of function 'vec_and'
> esl_vmx.c:103: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:105: warning: implicit declaration of function 'vec_or'
> esl_vmx.c:105: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:105: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:107: warning: implicit declaration of function 'vec_sub'
> esl_vmx.c:107: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:108: warning: implicit declaration of function 'vec_ctf'
> esl_vmx.c:108: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:111: warning: implicit declaration of function 'vec_cmplt'
> esl_vmx.c:111: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:111: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:112: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:113: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:114: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:114: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:115: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:116: warning: implicit declaration of function 'vec_madd'
> esl_vmx.c:116: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:118: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:119: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:119: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:120: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:120: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:121: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:121: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:122: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:122: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:123: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:123: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:124: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:124: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:125: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:125: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:126: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:126: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:127: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:128: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:130: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:130: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:131: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:133: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:133: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:134: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:136: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:137: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:137: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:140: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:141: warning: implicit declaration of function 'vec_sel'
> esl_vmx.c:141: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:142: error: AltiVec argument passed to unprototyped function
> esl_vmx.c: In function 'esl_vmx_expf':
> esl_vmx.c:173: error: can't convert between vector values of different size
> esl_vmx.c:176: warning: implicit declaration of function 'vec_cmpgt'
> esl_vmx.c:176: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:177: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:180: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:181: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:184: warning: implicit declaration of function 'vec_floor'
> esl_vmx.c:184: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:185: warning: implicit declaration of function 'vec_cts'
> esl_vmx.c:185: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:188: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:188: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:189: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:189: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:190: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:191: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:192: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:194: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:195: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:195: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:196: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:196: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:197: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:197: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:198: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:198: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:199: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:199: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:200: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:201: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:204: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:205: warning: implicit declaration of function 'vec_sl'
> esl_vmx.c:205: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:210: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:213: error: AltiVec argument passed to unprototyped function
> esl_vmx.c:214: error: AltiVec argument passed to unprototyped function
> make[2]: *** [esl_vmx.o] Error 1
> make[2]: Leaving directory
> `/build/buildd-hmmer_3.0-2-powerpc-XTH3EQ/hmmer-3.0/easel'
> make[1]: *** [easel_lib] Error 2
> make: *** [debian/stamp-makefile-build] Error 2
> dpkg-buildpackage: error: debian/rules build gave error exit status 2
> make[1]: Leaving directory
> `/build/buildd-hmmer_3.0-2-powerpc-XTH3EQ/hmmer-3.0'
> ────────────────────────────────────────────────────────────────────────────────
> Build finished at 20100829-1808
> FAILED [dpkg-buildpackage died]
> ────────────────────────────────────────────────────────────────────────────────
> Purging
> /var/lib/schroot/mount/sid-powerpc-sbuild-63940f4a-b9fe-44eb-894b-2e55bfb7b6e9/build/buildd-hmmer_3.0-2-powerpc-XTH3EQ
> Not removing build depends: cloned chroot in use
> ────────────────────────────────────────────────────────────────────────────────
> Finished at 20100829-1808
> Build needed 00:01:51, 15768k disc space
signature.asc
Description: Digital signature
--- End Message ---
--- Begin Message ---
Source: hmmer
Source-Version: 3.0-3
We believe that the bug you reported is fixed in the latest version of
hmmer, which is due to be installed in the Debian FTP archive:
hmmer-doc_3.0-3_all.deb
to main/h/hmmer/hmmer-doc_3.0-3_all.deb
hmmer_3.0-3.debian.tar.gz
to main/h/hmmer/hmmer_3.0-3.debian.tar.gz
hmmer_3.0-3.dsc
to main/h/hmmer/hmmer_3.0-3.dsc
hmmer_3.0-3_amd64.deb
to main/h/hmmer/hmmer_3.0-3_amd64.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 594...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Steffen Moeller <moel...@debian.org> (supplier of updated hmmer package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Mon, 25 Oct 2010 00:08:19 +0200
Source: hmmer
Binary: hmmer hmmer-doc
Architecture: source all amd64
Version: 3.0-3
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Steffen Moeller <moel...@debian.org>
Description:
hmmer - profile hidden Markov models for protein sequence analysis
hmmer-doc - profile hidden Markov models for protein sequence analysis (docs)
Closes: 594860
Changes:
hmmer (3.0-3) unstable; urgency=low
.
* Fix "FTBFS (powerpc): altivec and cast errors": remove special
casing for powerpc, so that it gets built with the dummy vector
implementation like most other architectures - contributed by
Gregor Herrrmann (Closes: #594860).
Checksums-Sha1:
7b3fb80647c2c7548bde328284f69fc1b0973bfa 1424 hmmer_3.0-3.dsc
c2f5dd94699a76f5e1f26cebc4cbb702cd295cfc 6070 hmmer_3.0-3.debian.tar.gz
63a0c33fe8ee2788fccab7b5c30d55e0aeca0ed8 759328 hmmer-doc_3.0-3_all.deb
bd89618cdab60b40945e5a22bf89182c2dbfe9f9 2216230 hmmer_3.0-3_amd64.deb
Checksums-Sha256:
8c4229e902e067849e5ed11fa2f749d551738095182749087ee28cb070246db8 1424
hmmer_3.0-3.dsc
fd562d3f2fc990faa5654a0ac9d9cf6db3b924f65971a28b2c34211bf1f475aa 6070
hmmer_3.0-3.debian.tar.gz
a2b5ea5a07c5209d185bf602a4c43426efa29fec243ee3955f760845a74f2fa1 759328
hmmer-doc_3.0-3_all.deb
9d884811169f7c622f3df60530289608dada2c485ed132b1dc1e1035d332a8f2 2216230
hmmer_3.0-3_amd64.deb
Files:
ea2c617cac3fc61cbd94190d7df0b9f5 1424 science optional hmmer_3.0-3.dsc
47d26f393842d69eccb2d8f4d6844221 6070 science optional
hmmer_3.0-3.debian.tar.gz
4d2e8bee0bb87c639cdf1eaa23ff3740 759328 doc optional hmmer-doc_3.0-3_all.deb
bed430ef6dcfa95ebccfb8ab8c8a36f4 2216230 science optional hmmer_3.0-3_amd64.deb
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--- End Message ---
