Your message dated Tue, 29 Jun 2010 22:32:26 +0000
with message-id <e1otjlu-0005nh...@ries.debian.org>
and subject line Bug#586830: fixed in autodocktools 1.5.4.cvs.20090603-1.1
has caused the Debian Bug report #586830,
regarding hardcodes Python 2.5
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
586830: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=586830
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: autodocktools
Version: 1.5.4.cvs.20090603-1
Severity: serious
Tags: patch
User: debian-pyt...@lists.debian.org
Usertags: python2.6
autodocktools package is uninstallable due to hardcoded Python version,
attached patch fixes it.
PS consider using priveate directory for AutoDockTools module
(--install-lib=/usr/share/autodocktools/)
diff -u autodocktools-1.5.4.cvs.20090603/debian/control autodocktools-1.5.4.cvs.20090603/debian/control
--- autodocktools-1.5.4.cvs.20090603/debian/control
+++ autodocktools-1.5.4.cvs.20090603/debian/control
@@ -5,9 +5,9 @@
DM-Upload-Allowed: yes
XS-Autobuild: yes
Uploaders: Steffen Moeller <moel...@debian.org>, Sargis Dallakyan <sar...@scripps.edu>
-Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4), python2.5-dev
+Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4), python, quilt
Standards-Version: 3.8.1
-XS-Python-Version: 2.5
+XS-Python-Version: >= 2.5
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/autodocktools/trunk/?rev=0&sc=0
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/mgltools/autodocktools/trunk/
Homepage: http://autodock.scripps.edu/
diff -u autodocktools-1.5.4.cvs.20090603/debian/rules autodocktools-1.5.4.cvs.20090603/debian/rules
--- autodocktools-1.5.4.cvs.20090603/debian/rules
+++ autodocktools-1.5.4.cvs.20090603/debian/rules
@@ -8,7 +8,7 @@
include /usr/share/cdbs/1/rules/debhelper.mk
include /usr/share/cdbs/1/class/python-distutils.mk
-#include /usr/share/cdbs/1/rules/patchsys-quilt.mk
+include /usr/share/cdbs/1/rules/patchsys-quilt.mk
install::
find . -name runAdt | xargs -r chmod +x
diff -u autodocktools-1.5.4.cvs.20090603/debian/changelog autodocktools-1.5.4.cvs.20090603/debian/changelog
--- autodocktools-1.5.4.cvs.20090603/debian/changelog
+++ autodocktools-1.5.4.cvs.20090603/debian/changelog
@@ -1,3 +1,14 @@
+autodocktools (1.5.4.cvs.20090603-1.1) unstable; urgency=low
+
+ * Non-maintainer upload.
+ * Change XS-Python-Version from "2.5" to ">= 2.5" to enable byte-compilation
+ for other Python versions
+ * Replace python2.5-dev with python in Build-Depends
+ * Add fix_shebangs.patch to fix wrong dependencies generated by pycentral
+ (quilt added to build dependencies)
+
+ -- Piotr Ożarowski <pi...@debian.org> Tue, 22 Jun 2010 23:01:28 +0200
+
autodocktools (1.5.4.cvs.20090603-1) unstable; urgency=low
* New upstream version.
only in patch2:
unchanged:
--- autodocktools-1.5.4.cvs.20090603.orig/debian/patches/fix_shebangs.patch
+++ autodocktools-1.5.4.cvs.20090603/debian/patches/fix_shebangs.patch
@@ -0,0 +1,30 @@
+Index: autodocktools-1.5.4.cvs.20090603/AutoDockTools/bin/adt
+===================================================================
+--- autodocktools-1.5.4.cvs.20090603.orig/AutoDockTools/bin/adt
++++ autodocktools-1.5.4.cvs.20090603/AutoDockTools/bin/adt
+@@ -1,4 +1,4 @@
+-#!/usr/bin/env python2.5
++#!/usr/bin/env python
+ #
+
+ import sys
+Index: autodocktools-1.5.4.cvs.20090603/AutoDockTools/bin/adt3
+===================================================================
+--- autodocktools-1.5.4.cvs.20090603.orig/AutoDockTools/bin/adt3
++++ autodocktools-1.5.4.cvs.20090603/AutoDockTools/bin/adt3
+@@ -1,4 +1,4 @@
+-#!/usr/bin/env python2.5
++#!/usr/bin/env python
+ #
+ import sys, getopt
+
+Index: autodocktools-1.5.4.cvs.20090603/AutoDockTools/bin/adt4
+===================================================================
+--- autodocktools-1.5.4.cvs.20090603.orig/AutoDockTools/bin/adt4
++++ autodocktools-1.5.4.cvs.20090603/AutoDockTools/bin/adt4
+@@ -1,4 +1,4 @@
+-#!/usr/bin/env python2.5
++#!/usr/bin/env python
+ #
+ import sys, getopt
+
only in patch2:
unchanged:
--- autodocktools-1.5.4.cvs.20090603.orig/debian/patches/series
+++ autodocktools-1.5.4.cvs.20090603/debian/patches/series
@@ -0,0 +1 @@
+fix_shebangs.patch
--- End Message ---
--- Begin Message ---
Source: autodocktools
Source-Version: 1.5.4.cvs.20090603-1.1
We believe that the bug you reported is fixed in the latest version of
autodocktools, which is due to be installed in the Debian FTP archive:
autodocktools_1.5.4.cvs.20090603-1.1.diff.gz
to non-free/a/autodocktools/autodocktools_1.5.4.cvs.20090603-1.1.diff.gz
autodocktools_1.5.4.cvs.20090603-1.1.dsc
to non-free/a/autodocktools/autodocktools_1.5.4.cvs.20090603-1.1.dsc
autodocktools_1.5.4.cvs.20090603-1.1_all.deb
to non-free/a/autodocktools/autodocktools_1.5.4.cvs.20090603-1.1_all.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 586...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Piotr Ożarowski <pi...@debian.org> (supplier of updated autodocktools package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Tue, 22 Jun 2010 23:01:28 +0200
Source: autodocktools
Binary: autodocktools
Architecture: source all
Version: 1.5.4.cvs.20090603-1.1
Distribution: unstable
Urgency: low
Maintainer: Debian-Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Piotr Ożarowski <pi...@debian.org>
Description:
autodocktools - GUI to help set up, launch and analyze AutoDock dockings
Closes: 586830
Changes:
autodocktools (1.5.4.cvs.20090603-1.1) unstable; urgency=low
.
* Non-maintainer upload.
* Change XS-Python-Version from "2.5" to ">= 2.5" to enable byte-compilation
for other Python versions
* Replace python2.5-dev with python in Build-Depends
* Add fix_shebangs.patch to fix wrong dependencies generated by pycentral
(quilt added to build dependencies)
* Closes: #586830
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