Your message dated Sat, 26 Jun 2010 12:39:52 +0000
with message-id <e1osufo-0002h1...@ries.debian.org>
and subject line Bug#587113: fixed in embassy-domalign 0.1.0+20100115-1
has caused the Debian Bug report #587113,
regarding embassy-domalign: FTBFS: allversusall.c:91: undefined reference to
`ajAcdGetDirlist'
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
587113: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=587113
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: embassy-domalign
Version: 0.1.0+20090715-1
Severity: serious
Tags: squeeze sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20100624 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part:
> gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\"
> -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"DOMALIGN\"
> -DVERSION=\"0.1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1
> -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1
> -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1
> -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1
> -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1
> -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1
> -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1
> -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -I. -I/usr/include
> -I/usr/include/eplplot -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64
> -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g
> -Wall -O2 -I/usr/include/eplplot -I/usr/include/ajax -I/usr/include/nucleus
> -O2 -D__amd64__ -c allversusall.c
> /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2
> -I/usr/include/eplplot -I/usr/include/ajax -I/usr/include/nucleus -O2
> -D__amd64__ -o allversusall allversusall.o -L/usr/lib -lnucleus -lajax
> -leplplot -lX11 -lm -lgd -lpng -lz -lm
> libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/include/eplplot
> -I/usr/include/ajax -I/usr/include/nucleus -O2 -D__amd64__ -o allversusall
> allversusall.o -L/usr/lib -lnucleus -lajax /usr/lib/libeplplot.so
> /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig
> /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
> allversusall.o: In function `main':
> /build/user-embassy-domalign_0.1.0+20090715-1-amd64-bLnk4e/embassy-domalign-0.1.0+20090715/src/allversusall.c:91:
> undefined reference to `ajAcdGetDirlist'
> /build/user-embassy-domalign_0.1.0+20090715-1-amd64-bLnk4e/embassy-domalign-0.1.0+20090715/src/allversusall.c:92:
> undefined reference to `ajAcdGetMatrixf'
> /build/user-embassy-domalign_0.1.0+20090715-1-amd64-bLnk4e/embassy-domalign-0.1.0+20090715/src/allversusall.c:93:
> undefined reference to `ajAcdGetFloat'
> /build/user-embassy-domalign_0.1.0+20090715-1-amd64-bLnk4e/embassy-domalign-0.1.0+20090715/src/allversusall.c:94:
> undefined reference to `ajAcdGetFloat'
> /build/user-embassy-domalign_0.1.0+20090715-1-amd64-bLnk4e/embassy-domalign-0.1.0+20090715/src/allversusall.c:95:
> undefined reference to `ajAcdGetOutdir'
> /build/user-embassy-domalign_0.1.0+20090715-1-amd64-bLnk4e/embassy-domalign-0.1.0+20090715/src/allversusall.c:96:
> undefined reference to `ajAcdGetOutfile'
> /usr/lib/libnucleus.so: undefined reference to `ajAcdExit'
> /usr/lib/libajax.so: undefined reference to `epcre_compile'
> /usr/lib/libnucleus.so: undefined reference to `ajSeqdbInit'
> /usr/lib/libnucleus.so: undefined reference to `ajGraphicsExit'
> /usr/lib/libajax.so: undefined reference to `pcre_exec'
> /usr/lib/libnucleus.so: undefined reference to `ajAcdInitPV'
> /usr/lib/libnucleus.so: undefined reference to `ajAcdInit'
> /usr/lib/libnucleus.so: undefined reference to `ajSeqDbExit'
> collect2: ld returned 1 exit status
The full build log is available from:
http://people.debian.org/~lucas/logs/2010/06/24/embassy-domalign_0.1.0+20090715-1_lsid64.buildlog
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot. Internet was not
accessible from the build systems.
--
| Lucas Nussbaum
| lu...@lucas-nussbaum.net http://www.lucas-nussbaum.net/ |
| jabber: lu...@nussbaum.fr GPG: 1024D/023B3F4F |
--- End Message ---
--- Begin Message ---
Source: embassy-domalign
Source-Version: 0.1.0+20100115-1
We believe that the bug you reported is fixed in the latest version of
embassy-domalign, which is due to be installed in the Debian FTP archive:
embassy-domalign_0.1.0+20100115-1.diff.gz
to main/e/embassy-domalign/embassy-domalign_0.1.0+20100115-1.diff.gz
embassy-domalign_0.1.0+20100115-1.dsc
to main/e/embassy-domalign/embassy-domalign_0.1.0+20100115-1.dsc
embassy-domalign_0.1.0+20100115-1_amd64.deb
to main/e/embassy-domalign/embassy-domalign_0.1.0+20100115-1_amd64.deb
embassy-domalign_0.1.0+20100115.orig.tar.gz
to main/e/embassy-domalign/embassy-domalign_0.1.0+20100115.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 587...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Charles Plessy <ple...@debian.org> (supplier of updated embassy-domalign
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Sat, 26 Jun 2010 18:51:56 +0900
Source: embassy-domalign
Binary: embassy-domalign
Architecture: source amd64
Version: 0.1.0+20100115-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Charles Plessy <ple...@debian.org>
Description:
embassy-domalign - Extra EMBOSS commands for protein domain alignment
Closes: 587113
Changes:
embassy-domalign (0.1.0+20100115-1) unstable; urgency=low
.
* New upstream release in which the version number was unchanged.
* debian/control:
- Build against EMBOSS 6.2 (Closes: #587113).
- Checked conformance with Policy 3.8.4 (no changes needed).
* debian/*manpages* refreshed.
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Files:
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embassy-domalign_0.1.0+20100115.orig.tar.gz
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--- End Message ---
