Your message dated Thu, 10 Jun 2010 17:47:41 +0000
with message-id <e1omlqv-0006jh...@ries.debian.org>
and subject line Bug#584386: fixed in cdk 1:1.0.2-5
has caused the Debian Bug report #584386,
regarding cdk: FTBFS: Java errors
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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immediately.)
--
584386: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=584386
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: cdk
Version: 1:1.0.2-4
Severity: serious
Tags: squeeze sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20100602 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part:
> make[1]: Entering directory `/build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2'
> make[1]: Nothing to be done for `update-config'.
> make[1]: Leaving directory `/build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2'
> cd . && /usr/lib/jvm/default-java/bin/java -classpath
> /usr/share/ant/lib/ant.jar:/usr/share/ant/lib/ant-launcher.jar:/usr/share/java/ant-nodeps.jar:/usr/share/java/javacc.jar:/usr/share/java/vecmath.jar:/usr/share/java/log4j-1.2.jar:/usr/share/java/commons-cli.jar:/usr/lib/jvm/default-java/lib/tools.jar
> -Dant.home=/usr/share/ant org.apache.tools.ant.Main -Dcompile.debug=true
> -Dcompile.optimize=true -propertyfile
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/debian/ant.properties info
> dist-all
> Buildfile: /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build.xml
>
> checkPlatforms:
>
> check:
>
> info:
> [echo] Platform:
> [echo] OS: Linux
> [echo] Architecture: amd64
> [echo] Version: 2.6.26-2-amd64
> [echo] Mac OS/X found: ${isMacOsX}
> [echo]
> [echo] Java/Ant Environment:
> [echo] Java version: 1.6.0_18
> [echo] Java vendor: Sun Microsystems Inc.
> [echo] Java dir: /usr/lib/jvm/java-6-openjdk/jre
> [echo] Java ext dir:
> /usr/lib/jvm/java-6-openjdk/jre/lib/ext:/usr/java/packages/lib/ext
> [echo] Java3: ${isJava13}
> [echo] Java4: ${isJava14}
> [echo] Java5: ${isJava15}
> [echo] Java6: true
> [echo] Java4+: true
> [echo] Java5+: true
> [echo] not Java5+: ${isNotJava15+}
> [echo] Java6: true
> [echo] Ant version: Apache Ant version 1.8.0 compiled on March 11
> 2010
> [echo] ${ANT_HOME}: /usr/share/ant
> [echo] hasAnt16: ${hasAnt16}
> [echo]
> [echo] CDK Environment:
> [echo] CDK version: 1.0.2
> [echo] build.xml: $Id: build.xml 10282 2008-03-02 15:25:03Z egonw $
> [echo] Junit found: ${junit.present}
> [echo] --- required libraries ---
> [echo] Vecmath found: true
> [echo] Log4j found: true
> [echo] JGraphT found: ${jgrapht.present}
> [echo] --- distributed (but optional) libraries ---
> [echo] Batik found: ${batik.present}
> [echo] CMLDOM found: ${cmllibs.present}
> [echo] DADML found: ${dadml.present}
> [echo] JAI found: ${jai.present}
> [echo] XIndice found: ${xindice.present}
> [echo] SJava found: ${sjava.present}
> [echo] JNI-InChI found: ${jniinchi.present}
> [echo] --- optional libraries ---
> [echo]
> [echo] Compiling:
> [echo] for: modern
> [echo] debug: on
> [echo] nowarn: on
> [echo] deprecation: on
> [echo] optimization: off
>
> dist-all:
>
> checkPlatforms:
>
> check:
>
> setupBuildDir:
> [mkdir] Created dir: /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build
> [mkdir] Created dir:
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/sourcedist
> [mkdir] Created dir: /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/dist
> [mkdir] Created dir:
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/reports
>
> init:
>
> javacc:
>
> customize:
>
> runDoclet:
> [echo] Not skipping doclet run...
> [javac] Compiling 1 source file to
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build
> [javac] Note:
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/src/net/sf/cdk/tools/MakeJavafilesFiles.java
> uses unchecked or unsafe operations.
> [javac] Note: Recompile with -Xlint:unchecked for details.
> [javac] Compiling 1 source file to
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build
> [javac] Note:
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/src/net/sf/cdk/tools/MakeRequiresfilesFiles.java
> uses unchecked or unsafe operations.
> [javac] Note: Recompile with -Xlint:unchecked for details.
>
> checkCompilableBlobs:
>
> compile-init:
>
> checkPlatforms:
>
> check:
>
> setupBuildDir:
>
> init:
>
> compile-needed-test:
>
> javacc:
>
> customize:
>
> runDoclet:
> [echo] Not skipping doclet run...
>
> checkCompilableBlobs:
>
> compile-info:
> [echo] Determine compilable blobs...
> [echo] Compile DADML: ${compile.dadml}
> [echo] Compile JAI: ${compile.jai}
> [echo] Compile Xindice: ${compile.xindice}
> [echo] Compile Jumbo52: ${compile.jumbo52}
> [echo] Compile R Project: ${compile.r-project}
> [echo] Compile Batik: ${do.compile.batik}
> [echo] Compile JNI-InChI: ${compile.jniinchi}
>
> compile-module:
> [echo] Compiling classes for CDK's interfaces module.
> [mkdir] Created dir:
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/dist/jar
> [echo] Datafiles defined: ${module.datafiles.present}
> [echo] Extra files defined: ${module.extrafiles.present}
> [echo] CDK dependencies defined: ${module.cdkdepends.present}
> [echo] Library dependencies defined: true
> [echo] Developer Library dependencies defined:
> ${module.devellibdepends.present}
> [mkdir] Created dir:
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src
> [copy] Copying 39 files to
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src
> [javac] Compiling 39 source files to
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build
> [jar] Building jar:
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/dist/jar/cdk-interfaces.jar
>
> checkPlatforms:
>
> check:
>
> setupBuildDir:
>
> init:
>
> compile-needed-test:
>
> javacc:
>
> customize:
>
> runDoclet:
> [echo] Not skipping doclet run...
>
> checkCompilableBlobs:
>
> compile-info:
> [echo] Determine compilable blobs...
> [echo] Compile DADML: ${compile.dadml}
> [echo] Compile JAI: ${compile.jai}
> [echo] Compile Xindice: ${compile.xindice}
> [echo] Compile Jumbo52: ${compile.jumbo52}
> [echo] Compile R Project: ${compile.r-project}
> [echo] Compile Batik: ${do.compile.batik}
> [echo] Compile JNI-InChI: ${compile.jniinchi}
>
> compile-module:
> [echo] Compiling classes for CDK's core module.
> [echo] Datafiles defined: true
> [echo] Extra files defined: ${module.extrafiles.present}
> [echo] CDK dependencies defined: true
> [echo] Library dependencies defined: true
> [echo] Developer Library dependencies defined:
> ${module.devellibdepends.present}
> [delete] Deleting directory
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src
> [mkdir] Created dir:
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src
> [copy] Copying 22 files to
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src
> [javac] Compiling 22 source files to
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build
> [javac] Note: Some input files use unchecked or unsafe operations.
> [javac] Note: Recompile with -Xlint:unchecked for details.
> [jar] Building jar:
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/dist/jar/cdk-core.jar
>
> checkPlatforms:
>
> check:
>
> setupBuildDir:
>
> init:
>
> compile-needed-test:
>
> javacc:
>
> customize:
>
> runDoclet:
> [echo] Not skipping doclet run...
>
> checkCompilableBlobs:
>
> compile-info:
> [echo] Determine compilable blobs...
> [echo] Compile DADML: ${compile.dadml}
> [echo] Compile JAI: ${compile.jai}
> [echo] Compile Xindice: ${compile.xindice}
> [echo] Compile Jumbo52: ${compile.jumbo52}
> [echo] Compile R Project: ${compile.r-project}
> [echo] Compile Batik: ${do.compile.batik}
> [echo] Compile JNI-InChI: ${compile.jniinchi}
>
> compile-module:
> [echo] Compiling classes for CDK's standard module.
> [echo] Datafiles defined: ${module.datafiles.present}
> [echo] Extra files defined: ${module.extrafiles.present}
> [echo] CDK dependencies defined: true
> [echo] Library dependencies defined: true
> [echo] Developer Library dependencies defined:
> ${module.devellibdepends.present}
> [delete] Deleting directory
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src
> [mkdir] Created dir:
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src
> [copy] Copying 82 files to
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src
> [javac] Compiling 82 source files to
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BFSShortestPath.java:35:
> package org._3pq.jgrapht does not exist
> [javac] import org._3pq.jgrapht.Edge;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BFSShortestPath.java:36:
> package org._3pq.jgrapht does not exist
> [javac] import org._3pq.jgrapht.Graph;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BFSShortestPath.java:37:
> package org._3pq.jgrapht.traverse does not exist
> [javac] import org._3pq.jgrapht.traverse.BreadthFirstIterator;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BFSShortestPath.java:52:
> cannot find symbol
> [javac] symbol : class Graph
> [javac] location: class org.openscience.cdk.graph.BFSShortestPath
> [javac] public static List findPathBetween( Graph graph, Object
> startVertex,
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BFSShortestPath.java:88:
> cannot find symbol
> [javac] symbol : class BreadthFirstIterator
> [javac] location: class org.openscience.cdk.graph.BFSShortestPath
> [javac] private static class MyBreadthFirstIterator extends
> BreadthFirstIterator {
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BFSShortestPath.java:90:
> cannot find symbol
> [javac] symbol : class Graph
> [javac] location: class
> org.openscience.cdk.graph.BFSShortestPath.MyBreadthFirstIterator
> [javac] public MyBreadthFirstIterator(Graph g, Object
> startVertex) {
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BFSShortestPath.java:94:
> cannot find symbol
> [javac] symbol : class Edge
> [javac] location: class
> org.openscience.cdk.graph.BFSShortestPath.MyBreadthFirstIterator
> [javac] protected void encounterVertex( Object vertex, Edge edge ) {
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BFSShortestPath.java:99:
> cannot find symbol
> [javac] symbol : class Edge
> [javac] location: class
> org.openscience.cdk.graph.BFSShortestPath.MyBreadthFirstIterator
> [javac] public Edge getSpanningTreeEdge( Object vertex ) {
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BiconnectivityInspector.java:40:
> package org._3pq.jgrapht does not exist
> [javac] import org._3pq.jgrapht.Edge;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BiconnectivityInspector.java:41:
> package org._3pq.jgrapht does not exist
> [javac] import org._3pq.jgrapht.Graph;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BiconnectivityInspector.java:42:
> package org._3pq.jgrapht does not exist
> [javac] import org._3pq.jgrapht.UndirectedGraph;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BiconnectivityInspector.java:43:
> package org._3pq.jgrapht.alg does not exist
> [javac] import org._3pq.jgrapht.alg.ConnectivityInspector;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BiconnectivityInspector.java:44:
> package org._3pq.jgrapht.event does not exist
> [javac] import org._3pq.jgrapht.event.GraphEdgeChangeEvent;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BiconnectivityInspector.java:45:
> package org._3pq.jgrapht.event does not exist
> [javac] import org._3pq.jgrapht.event.GraphVertexChangeEvent;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BiconnectivityInspector.java:46:
> package org._3pq.jgrapht.graph does not exist
> [javac] import org._3pq.jgrapht.graph.SimpleGraph;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BiconnectivityInspector.java:47:
> package org._3pq.jgrapht.graph does not exist
> [javac] import org._3pq.jgrapht.graph.Subgraph;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BiconnectivityInspector.java:63:
> cannot find symbol
> [javac] symbol : class UndirectedGraph
> [javac] location: class org.openscience.cdk.graph.BiconnectivityInspector
> [javac] private UndirectedGraph graph;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BiconnectivityInspector.java:70:
> cannot find symbol
> [javac] symbol : class UndirectedGraph
> [javac] location: class org.openscience.cdk.graph.BiconnectivityInspector
> [javac] public BiconnectivityInspector(UndirectedGraph g) {
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BiconnectivityInspector.java:246:
> cannot find symbol
> [javac] symbol : class GraphEdgeChangeEvent
> [javac] location: class org.openscience.cdk.graph.BiconnectivityInspector
> [javac] public void edgeAdded( GraphEdgeChangeEvent e ) {
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BiconnectivityInspector.java:254:
> cannot find symbol
> [javac] symbol : class GraphEdgeChangeEvent
> [javac] location: class org.openscience.cdk.graph.BiconnectivityInspector
> [javac] public void edgeRemoved( GraphEdgeChangeEvent e ) {
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BiconnectivityInspector.java:262:
> cannot find symbol
> [javac] symbol : class GraphVertexChangeEvent
> [javac] location: class org.openscience.cdk.graph.BiconnectivityInspector
> [javac] public void vertexAdded( GraphVertexChangeEvent e ) {
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BiconnectivityInspector.java:270:
> cannot find symbol
> [javac] symbol : class GraphVertexChangeEvent
> [javac] location: class org.openscience.cdk.graph.BiconnectivityInspector
> [javac] public void vertexRemoved( GraphVertexChangeEvent e ) {
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/MinimalPathIterator.java:38:
> package org._3pq.jgrapht does not exist
> [javac] import org._3pq.jgrapht.DirectedGraph;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/MinimalPathIterator.java:39:
> package org._3pq.jgrapht does not exist
> [javac] import org._3pq.jgrapht.Edge;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/MinimalPathIterator.java:40:
> package org._3pq.jgrapht does not exist
> [javac] import org._3pq.jgrapht.Graph;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/MinimalPathIterator.java:41:
> package org._3pq.jgrapht.graph does not exist
> [javac] import org._3pq.jgrapht.graph.DefaultDirectedGraph;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/MinimalPathIterator.java:42:
> package org._3pq.jgrapht.graph does not exist
> [javac] import org._3pq.jgrapht.graph.SimpleGraph;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/MinimalPathIterator.java:43:
> package org._3pq.jgrapht.traverse does not exist
> [javac] import org._3pq.jgrapht.traverse.BreadthFirstIterator;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/MinimalPathIterator.java:59:
> cannot find symbol
> [javac] symbol : class Graph
> [javac] location: class org.openscience.cdk.graph.MinimalPathIterator
> [javac] private Graph g;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/MinimalPathIterator.java:60:
> cannot find symbol
> [javac] symbol : class DirectedGraph
> [javac] location: class org.openscience.cdk.graph.MinimalPathIterator
> [javac] private DirectedGraph shortestPathGraph;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/MinimalPathIterator.java:73:
> cannot find symbol
> [javac] symbol : class SimpleGraph
> [javac] location: class org.openscience.cdk.graph.MinimalPathIterator
> [javac] public MinimalPathIterator(SimpleGraph g, Object sourceVertex,
> Object targetVertex) {
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/MinimalPathIterator.java:274:
> cannot find symbol
> [javac] symbol : class Graph
> [javac] location: class org.openscience.cdk.graph.MinimalPathIterator
> [javac] private List edgeList(Graph g, List vertexList) {
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/MinimalPathIterator.java:288:
> cannot find symbol
> [javac] symbol : class BreadthFirstIterator
> [javac] location: class org.openscience.cdk.graph.MinimalPathIterator
> [javac] private static class MyBreadthFirstIterator extends
> BreadthFirstIterator {
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/MinimalPathIterator.java:290:
> cannot find symbol
> [javac] symbol : class Graph
> [javac] location: class
> org.openscience.cdk.graph.MinimalPathIterator.MyBreadthFirstIterator
> [javac] public MyBreadthFirstIterator(Graph g, Object
> startVertex) {
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/MinimalPathIterator.java:297:
> cannot find symbol
> [javac] symbol : class Edge
> [javac] location: class
> org.openscience.cdk.graph.MinimalPathIterator.MyBreadthFirstIterator
> [javac] protected void encounterVertex( Object vertex, Edge edge ) {
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/MoleculeGraphs.java:31:
> package org._3pq.jgrapht.graph does not exist
> [javac] import org._3pq.jgrapht.graph.SimpleGraph;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/MoleculeGraphs.java:56:
> cannot find symbol
> [javac] symbol : class SimpleGraph
> [javac] location: class org.openscience.cdk.graph.MoleculeGraphs
> [javac] static public SimpleGraph getMoleculeGraph(IAtomContainer
> molecule) {
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/SSSRFinder.java:31:
> package org._3pq.jgrapht does not exist
> [javac] import org._3pq.jgrapht.UndirectedGraph;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/CycleBasis.java:42:
> package org._3pq.jgrapht does not exist
> [javac] import org._3pq.jgrapht.Edge;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/CycleBasis.java:43:
> package org._3pq.jgrapht does not exist
> [javac] import org._3pq.jgrapht.UndirectedGraph;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/CycleBasis.java:44:
> package org._3pq.jgrapht.alg does not exist
> [javac] import org._3pq.jgrapht.alg.DijkstraShortestPath;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/CycleBasis.java:45:
> package org._3pq.jgrapht.graph does not exist
> [javac] import org._3pq.jgrapht.graph.UndirectedSubgraph;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/SimpleCycleBasis.java:31:
> package org._3pq.jgrapht does not exist
> [javac] import org._3pq.jgrapht.DirectedGraph;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/SimpleCycleBasis.java:32:
> package org._3pq.jgrapht does not exist
> [javac] import org._3pq.jgrapht.Edge;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/SimpleCycleBasis.java:33:
> package org._3pq.jgrapht does not exist
> [javac] import org._3pq.jgrapht.Graph;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/SimpleCycleBasis.java:34:
> package org._3pq.jgrapht does not exist
> [javac] import org._3pq.jgrapht.UndirectedGraph;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/SimpleCycleBasis.java:35:
> package org._3pq.jgrapht.alg does not exist
> [javac] import org._3pq.jgrapht.alg.ConnectivityInspector;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/SimpleCycleBasis.java:36:
> package org._3pq.jgrapht.graph does not exist
> [javac] import org._3pq.jgrapht.graph.SimpleDirectedGraph;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/SimpleCycleBasis.java:37:
> package org._3pq.jgrapht.graph does not exist
> [javac] import org._3pq.jgrapht.graph.SimpleGraph;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/SimpleCycleBasis.java:38:
> package org._3pq.jgrapht.graph does not exist
> [javac] import org._3pq.jgrapht.graph.Subgraph;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/CycleBasis.java:74:
> cannot find symbol
> [javac] symbol : class UndirectedGraph
> [javac] location: class
> org.openscience.cdk.ringsearch.cyclebasis.CycleBasis
> [javac] private UndirectedGraph baseGraph;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/CycleBasis.java:82:
> cannot find symbol
> [javac] symbol : class UndirectedGraph
> [javac] location: class
> org.openscience.cdk.ringsearch.cyclebasis.CycleBasis
> [javac] public CycleBasis (UndirectedGraph g) {
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/SimpleCycleBasis.java:60:
> cannot find symbol
> [javac] symbol : class UndirectedGraph
> [javac] location: class
> org.openscience.cdk.ringsearch.cyclebasis.SimpleCycleBasis
> [javac] private UndirectedGraph graph;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/SimpleCycleBasis.java:65:
> cannot find symbol
> [javac] symbol : class UndirectedGraph
> [javac] location: class
> org.openscience.cdk.ringsearch.cyclebasis.SimpleCycleBasis
> [javac] public SimpleCycleBasis (List cycles, List edgeList,
> UndirectedGraph graph) {
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/SimpleCycleBasis.java:74:
> cannot find symbol
> [javac] symbol : class UndirectedGraph
> [javac] location: class
> org.openscience.cdk.ringsearch.cyclebasis.SimpleCycleBasis
> [javac] public SimpleCycleBasis (UndirectedGraph graph) {
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/SimpleCycleBasis.java:796:
> cannot find symbol
> [javac] symbol : class Edge
> [javac] location: class
> org.openscience.cdk.ringsearch.cyclebasis.SimpleCycleBasis
> [javac] private int getEdgeIndex(Edge edge) {
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/SimpleCycle.java:27:
> package org._3pq.jgrapht does not exist
> [javac] import org._3pq.jgrapht.Edge;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/SimpleCycle.java:28:
> package org._3pq.jgrapht does not exist
> [javac] import org._3pq.jgrapht.UndirectedGraph;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/SimpleCycle.java:29:
> package org._3pq.jgrapht.graph does not exist
> [javac] import org._3pq.jgrapht.graph.UndirectedSubgraph;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/SimpleCycle.java:46:
> cannot find symbol
> [javac] symbol: class UndirectedSubgraph
> [javac] public class SimpleCycle extends UndirectedSubgraph {
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/SimpleCycle.java:56:
> cannot find symbol
> [javac] symbol : class UndirectedGraph
> [javac] location: class
> org.openscience.cdk.ringsearch.cyclebasis.SimpleCycle
> [javac] public SimpleCycle (UndirectedGraph g, Collection edges) {
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/SimpleCycle.java:66:
> cannot find symbol
> [javac] symbol : class UndirectedGraph
> [javac] location: class
> org.openscience.cdk.ringsearch.cyclebasis.SimpleCycle
> [javac] public SimpleCycle (UndirectedGraph g, Set edges) {
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/SimpleCycleBasis.java:800:
> cannot find symbol
> [javac] symbol : class SimpleGraph
> [javac] location: class
> org.openscience.cdk.ringsearch.cyclebasis.SimpleCycleBasis
> [javac] private class AuxiliaryGraph extends SimpleGraph {
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/SimpleCycleBasis.java:812:
> cannot find symbol
> [javac] symbol : class Graph
> [javac] location: class
> org.openscience.cdk.ringsearch.cyclebasis.SimpleCycleBasis.AuxiliaryGraph
> [javac] Graph g;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/SimpleCycleBasis.java:815:
> cannot find symbol
> [javac] symbol : class Graph
> [javac] location: class
> org.openscience.cdk.ringsearch.cyclebasis.SimpleCycleBasis.AuxiliaryGraph
> [javac] AuxiliaryGraph(Graph graph, boolean[] u) {
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/SimpleCycleBasis.java:885:
> cannot find symbol
> [javac] symbol : class SimpleGraph
> [javac] location: class
> org.openscience.cdk.ringsearch.cyclebasis.SimpleCycleBasis
> [javac] private class AuxiliaryGraph2 extends SimpleGraph {
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/SimpleCycleBasis.java:900:
> cannot find symbol
> [javac] symbol : class Graph
> [javac] location: class
> org.openscience.cdk.ringsearch.cyclebasis.SimpleCycleBasis.AuxiliaryGraph2
> [javac] private Graph g;
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/cyclebasis/SimpleCycleBasis.java:904:
> cannot find symbol
> [javac] symbol : class Graph
> [javac] location: class
> org.openscience.cdk.ringsearch.cyclebasis.SimpleCycleBasis.AuxiliaryGraph2
> [javac] AuxiliaryGraph2(Graph graph, List edgeList, boolean[]
> ui, boolean[] uj) {
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/geometry/BondTools.java:431:
> warning: [deprecation]
> getMorganNumbers(org.openscience.cdk.interfaces.IAtomContainer) in
> org.openscience.cdk.graph.invariant.MorganNumbersTools has been deprecated
> [javac] int[] morgannumbers =
> MorganNumbersTools.getMorganNumbers(container);
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BFSShortestPath.java:57:
> cannot find symbol
> [javac] symbol : method hasNext()
> [javac] location: class
> org.openscience.cdk.graph.BFSShortestPath.MyBreadthFirstIterator
> [javac] while( iter.hasNext( ) ) {
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BFSShortestPath.java:58:
> cannot find symbol
> [javac] symbol : method next()
> [javac] location: class
> org.openscience.cdk.graph.BFSShortestPath.MyBreadthFirstIterator
> [javac] Object vertex = iter.next( );
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BFSShortestPath.java:72:
> cannot find symbol
> [javac] symbol : class Edge
> [javac] location: class org.openscience.cdk.graph.BFSShortestPath
> [javac] Edge edge = iter.getSpanningTreeEdge( endVertex );
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BFSShortestPath.java:95:
> non-static variable super cannot be referenced from a static context
> [javac] super.encounterVertex( vertex, edge );
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BFSShortestPath.java:100:
> cannot find symbol
> [javac] symbol : class Edge
> [javac] location: class
> org.openscience.cdk.graph.BFSShortestPath.MyBreadthFirstIterator
> [javac] return (Edge) getSeenData( vertex );
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BFSShortestPath.java:100:
> cannot find symbol
> [javac] symbol : method getSeenData(java.lang.Object)
> [javac] location: class
> org.openscience.cdk.graph.BFSShortestPath.MyBreadthFirstIterator
> [javac] return (Edge) getSeenData( vertex );
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BiconnectivityInspector.java:80:
> cannot find symbol
> [javac] symbol : class ConnectivityInspector
> [javac] location: class org.openscience.cdk.graph.BiconnectivityInspector
> [javac] new
> ConnectivityInspector(graph).connectedSets().iterator();
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BiconnectivityInspector.java:88:
> cannot find symbol
> [javac] symbol : class Graph
> [javac] location: class org.openscience.cdk.graph.BiconnectivityInspector
> [javac] Graph subgraph = new Subgraph(graph,
> connectedSet, null);
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BiconnectivityInspector.java:88:
> cannot find symbol
> [javac] symbol : class Subgraph
> [javac] location: class org.openscience.cdk.graph.BiconnectivityInspector
> [javac] Graph subgraph = new Subgraph(graph,
> connectedSet, null);
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BiconnectivityInspector.java:113:
> cannot find symbol
> [javac] symbol : class Edge
> [javac] location: class org.openscience.cdk.graph.BiconnectivityInspector
> [javac] Edge edge =
> subgraph.getEdge(parentVertex, currentVertex);
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BiconnectivityInspector.java:126:
> cannot find symbol
> [javac] symbol : class Edge
> [javac] location: class org.openscience.cdk.graph.BiconnectivityInspector
> [javac] Edge edge =
> (Edge)edges.next();
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BiconnectivityInspector.java:126:
> cannot find symbol
> [javac] symbol : class Edge
> [javac] location: class org.openscience.cdk.graph.BiconnectivityInspector
> [javac] Edge edge =
> (Edge)edges.next();
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BiconnectivityInspector.java:149:
> cannot find symbol
> [javac] symbol : class SimpleGraph
> [javac] location: class org.openscience.cdk.graph.BiconnectivityInspector
> [javac] SimpleGraph h = new SimpleGraph();
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BiconnectivityInspector.java:149:
> cannot find symbol
> [javac] symbol : class SimpleGraph
> [javac] location: class org.openscience.cdk.graph.BiconnectivityInspector
> [javac] SimpleGraph h = new SimpleGraph();
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BiconnectivityInspector.java:166:
> cannot find symbol
> [javac] symbol : class Edge
> [javac] location: class org.openscience.cdk.graph.BiconnectivityInspector
> [javac] Edge l = (Edge)
> adjacentEdges.next();
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BiconnectivityInspector.java:166:
> cannot find symbol
> [javac] symbol : class Edge
> [javac] location: class org.openscience.cdk.graph.BiconnectivityInspector
> [javac] Edge l = (Edge)
> adjacentEdges.next();
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BiconnectivityInspector.java:177:
> cannot find symbol
> [javac] symbol : class Edge
> [javac] location: class org.openscience.cdk.graph.BiconnectivityInspector
> [javac]
> Edge f = subgraph.getEdge(u, pu);
> [javac]
> ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BiconnectivityInspector.java:196:
> cannot find symbol
> [javac] symbol : class ConnectivityInspector
> [javac] location: class org.openscience.cdk.graph.BiconnectivityInspector
> [javac] ConnectivityInspector
> connectivityInspector =
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/BiconnectivityInspector.java:197:
> cannot find symbol
> [javac] symbol : class ConnectivityInspector
> [javac] location: class org.openscience.cdk.graph.BiconnectivityInspector
> [javac] new ConnectivityInspector(h);
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/MinimalPathIterator.java:138:
> cannot find symbol
> [javac] symbol : class DefaultDirectedGraph
> [javac] location: class org.openscience.cdk.graph.MinimalPathIterator
> [javac] shortestPathGraph = new DefaultDirectedGraph();
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/MinimalPathIterator.java:144:
> cannot find symbol
> [javac] symbol : method hasNext()
> [javac] location: class
> org.openscience.cdk.graph.MinimalPathIterator.MyBreadthFirstIterator
> [javac] for (MyBreadthFirstIterator iter = new
> MyBreadthFirstIterator(g, targetVertex); iter.hasNext(); ) {
> [javac]
> ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/MinimalPathIterator.java:145:
> cannot find symbol
> [javac] symbol : method next()
> [javac] location: class
> org.openscience.cdk.graph.MinimalPathIterator.MyBreadthFirstIterator
> [javac] Object vertex = iter.next();
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/MinimalPathIterator.java:152:
> cannot find symbol
> [javac] symbol : class Edge
> [javac] location: class org.openscience.cdk.graph.MinimalPathIterator
> [javac] Edge edge = (Edge) edges.next();
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/MinimalPathIterator.java:152:
> cannot find symbol
> [javac] symbol : class Edge
> [javac] location: class org.openscience.cdk.graph.MinimalPathIterator
> [javac] Edge edge = (Edge) edges.next();
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/MinimalPathIterator.java:235:
> cannot find symbol
> [javac] symbol : class Edge
> [javac] location: class org.openscience.cdk.graph.MinimalPathIterator
> [javac] Edge edge =
> (Edge)edgeIterator.next();
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/MinimalPathIterator.java:235:
> cannot find symbol
> [javac] symbol : class Edge
> [javac] location: class org.openscience.cdk.graph.MinimalPathIterator
> [javac] Edge edge =
> (Edge)edgeIterator.next();
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/MinimalPathIterator.java:298:
> non-static variable super cannot be referenced from a static context
> [javac] super.encounterVertex(vertex, edge);
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/MinimalPathIterator.java:305:
> non-static variable super cannot be referenced from a static context
> [javac] Object nextVertex = super.provideNextVertex();
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/MinimalPathIterator.java:305:
> cannot find symbol
> [javac] symbol : method provideNextVertex()
> [javac] location: class java.lang.Object
> [javac] Object nextVertex = super.provideNextVertex();
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/MoleculeGraphs.java:57:
> cannot find symbol
> [javac] symbol : class SimpleGraph
> [javac] location: class org.openscience.cdk.graph.MoleculeGraphs
> [javac] SimpleGraph graph = new SimpleGraph();
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/graph/MoleculeGraphs.java:57:
> cannot find symbol
> [javac] symbol : class SimpleGraph
> [javac] location: class org.openscience.cdk.graph.MoleculeGraphs
> [javac] SimpleGraph graph = new SimpleGraph();
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/isomorphism/IsomorphismTester.java:145:
> warning: [deprecation]
> getMorganNumbers(org.openscience.cdk.interfaces.IAtomContainer) in
> org.openscience.cdk.graph.invariant.MorganNumbersTools has been deprecated
> [javac] this.baseTable =
> MorganNumbersTools.getMorganNumbers(base);
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/isomorphism/IsomorphismTester.java:159:
> warning: [deprecation]
> getMorganNumbers(org.openscience.cdk.interfaces.IAtomContainer) in
> org.openscience.cdk.graph.invariant.MorganNumbersTools has been deprecated
> [javac] this.compareTable =
> MorganNumbersTools.getMorganNumbers(compare);
> [javac] ^
> [javac]
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build/src/org/openscience/cdk/ringsearch/SSSRFinder.java:198:
> cannot find symbol
> [javac] symbol : class UndirectedGraph
> [javac] location: class org.openscience.cdk.ringsearch.SSSRFinder
> [javac] UndirectedGraph molGraph =
> MoleculeGraphs.getMoleculeGraph(ac);
> [javac] ^
> [javac] Note: Some input files use unchecked or unsafe operations.
> [javac] Note: Recompile with -Xlint:unchecked for details.
> [javac] 100 errors
> [javac] 3 warnings
>
> BUILD FAILED
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build.xml:452: The following
> error occurred while executing this line:
> /build/user-cdk_1.0.2-4-amd64-g6ftO_/cdk-1.0.2/build.xml:352: Compile failed;
> see the compiler error output for details.
>
> Total time: 6 seconds
> make: *** [debian/stamp-ant-build] Error 1
The full build log is available from:
http://people.debian.org/~lucas/logs/2010/06/02/cdk_1:1.0.2-4_lsid64.buildlog
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot. Internet was not
accessible from the build systems.
--
| Lucas Nussbaum
| lu...@lucas-nussbaum.net http://www.lucas-nussbaum.net/ |
| jabber: lu...@nussbaum.fr GPG: 1024D/023B3F4F |
--- End Message ---
--- Begin Message ---
Source: cdk
Source-Version: 1:1.0.2-5
We believe that the bug you reported is fixed in the latest version of
cdk, which is due to be installed in the Debian FTP archive:
cdk_1.0.2-5.diff.gz
to main/c/cdk/cdk_1.0.2-5.diff.gz
cdk_1.0.2-5.dsc
to main/c/cdk/cdk_1.0.2-5.dsc
libcdk-java_1.0.2-5_all.deb
to main/c/cdk/libcdk-java_1.0.2-5_all.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 584...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Torsten Werner <twer...@debian.org> (supplier of updated cdk package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Thu, 10 Jun 2010 19:25:18 +0200
Source: cdk
Binary: libcdk-java
Architecture: source all
Version: 1:1.0.2-5
Distribution: unstable
Urgency: low
Maintainer: Debian Java Maintainers
<pkg-java-maintain...@lists.alioth.debian.org>
Changed-By: Torsten Werner <twer...@debian.org>
Description:
libcdk-java - Chemistry Development Kit (CDK) Java libraries
Closes: 584386
Changes:
cdk (1:1.0.2-5) unstable; urgency=low
.
* Team upload.
* Change Build-Depends: libjgrapht0.6-java-link. (Closes: #584386)
* Remove Paul from Uploaders list.
Checksums-Sha1:
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21a2e21c4789548467a02d3b8df637b6969e0cdb 10368 cdk_1.0.2-5.diff.gz
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cdk_1.0.2-5.dsc
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cdk_1.0.2-5.diff.gz
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libcdk-java_1.0.2-5_all.deb
Files:
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3f38cbfb157b75a890e0d505a5c790d2 10368 java optional cdk_1.0.2-5.diff.gz
92b984110d07d82df3c562b64818ddec 4502140 java optional
libcdk-java_1.0.2-5_all.deb
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--- End Message ---
