On 3 June 2010 at 12:10, Lucas Nussbaum wrote: | Source: rmpi | Version: 0.5-8-1 | Severity: serious | Tags: squeeze sid | User: debian...@lists.debian.org | Usertags: qa-ftbfs-20100602 qa-ftbfs | Justification: FTBFS on amd64 | | Hi, | | During a rebuild of all packages in sid, your package failed to build on | amd64.
Thanks --- I noticed the same failure at my cran2deb autobuild of all of CRAN with Rmpi and npRmpi (which embeds Rmpi). I presume something changed in Open MPI amd I now have to prefix the 'R CMD INSTALL ....' command with orterun to provide a MPI context. I'll try that in my pbuilder first. Dirk | Relevant part: | > make[1]: Entering directory `/build/user-rmpi_0.5-8-1-amd64-7BvXv7/rmpi-0.5-8/src' | > make[1]: Leaving directory `/build/user-rmpi_0.5-8-1-amd64-7BvXv7/rmpi-0.5-8/src' | > installing to /build/user-rmpi_0.5-8-1-amd64-7BvXv7/rmpi-0.5-8/debian/r-cran-rmpi/usr/lib/R/site-library/Rmpi/libs | > ** R | > ** demo | > ** inst | > ** preparing package for lazy loading | > ** help | > *** installing help indices | > ** building package indices ... | > ** testing if installed package can be loaded | > [bordereau-62.bordeaux.grid5000.fr:31433] [[INVALID],INVALID] ORTE_ERROR_LOG: A system-required executable either could not be found or was not executable by this user in file ../../../../../../orte/mca/ess/singleton/ess_singleton_module.c at line 269 | > [bordereau-62.bordeaux.grid5000.fr:31433] [[INVALID],INVALID] ORTE_ERROR_LOG: A system-required executable either could not be found or was not executable by this user in file ../../../../../../orte/mca/ess/singleton/ess_singleton_module.c at line 143 | > [bordereau-62.bordeaux.grid5000.fr:31433] [[INVALID],INVALID] ORTE_ERROR_LOG: A system-required executable either could not be found or was not executable by this user in file ../../../orte/runtime/orte_init.c at line 132 | > -------------------------------------------------------------------------- | > It looks like orte_init failed for some reason; your parallel process is | > likely to abort. There are many reasons that a parallel process can | > fail during orte_init; some of which are due to configuration or | > environment problems. This failure appears to be an internal failure; | > here's some additional information (which may only be relevant to an | > Open MPI developer): | > | > orte_ess_set_name failed | > --> Returned value A system-required executable either could not be found or was not executable by this user (-127) instead of ORTE_SUCCESS | > -------------------------------------------------------------------------- | > -------------------------------------------------------------------------- | > It looks like MPI_INIT failed for some reason; your parallel process is | > likely to abort. There are many reasons that a parallel process can | > fail during MPI_INIT; some of which are due to configuration or environment | > problems. This failure appears to be an internal failure; here's some | > additional information (which may only be relevant to an Open MPI | > developer): | > | > ompi_mpi_init: orte_init failed | > --> Returned "A system-required executable either could not be found or was not executable by this user" (-127) instead of "Success" (0) | > -------------------------------------------------------------------------- | > *** An error occurred in MPI_Init | > *** before MPI was initialized | > *** MPI_ERRORS_ARE_FATAL (your MPI job will now abort) | > [bordereau-62.bordeaux.grid5000.fr:31433] Abort before MPI_INIT completed successfully; not able to guarantee that all other processes were killed! | > make: *** [R_any_arch] Error 1 | | The full build log is available from: | http://people.debian.org/~lucas/logs/2010/06/02/rmpi_0.5-8-1_lsid64.buildlog | | A list of current common problems and possible solutions is available at | http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! | | About the archive rebuild: The rebuild was done on about 50 AMD64 nodes | of the Grid'5000 platform, using a clean chroot. Internet was not | accessible from the build systems. | | -- | | Lucas Nussbaum | | lu...@lucas-nussbaum.net http://www.lucas-nussbaum.net/ | | | jabber: lu...@nussbaum.fr GPG: 1024D/023B3F4F | | | -- Regards, Dirk -- To UNSUBSCRIBE, email to debian-bugs-rc-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
