Your message dated Wed, 26 May 2010 22:48:43 +0000
with message-id <e1ohpp1-0006hd...@ries.debian.org>
and subject line Bug#581204: fixed in nipy 0.1.2+20100526-1
has caused the Debian Bug report #581204,
regarding python-nipy: FTBFS on hppa due to undefined symbol:
__canonicalize_funcptr_for_compare while sphinxing
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
581204: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=581204
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: python-nipy
Version: 0.1.2+20100505-1
Severity: important
Full build log:
https://buildd.debian.org/fetch.cgi?pkg=nipy;ver=0.1.2%2B20100505-1;arch=hppa;stamp=1273551985
exposed as
Exception occurred:
File
"/build/buildd-nipy_0.1.2+20100505-1-hppa-aHzLbr/nipy-0.1.2+20100505/doc/sphinxext/inheritance_diagram.py",
line 107, in _import_class_or_module
"Could not import class or module '%s' specified for inheritance diagram" %
name)
ValueError: Could not import class or module 'nipy.neurospin.clustering.bgmm'
specified for inheritance diagram
The full traceback has been saved in /tmp/sphinx-err-seD5Hu.log, if you want to
report the issue to the developers.
Please also report this if it was a user error, so that a better error message
can be provided next time.
Either send bugs to the mailing list at
<http://groups.google.com/group/sphinx-dev/>,
or report them in the tracker at
<http://bitbucket.org/birkenfeld/sphinx/issues/>. Thanks!
make[1]: *** [htmlonly] Error 1
make[1]: Leaving directory
`/build/buildd-nipy_0.1.2+20100505-1-hppa-aHzLbr/nipy-0.1.2+20100505/doc'
make: *** [doc-stamp] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2
───────────────────────────────────────────────────────────────────────────
but the actual reason is:
In [4]: import nipy.neurospin.clustering.bgmm
---------------------------------------------------------------------------
ImportError Traceback (most recent call last)
/home/yoh/nipy/nipy-0.1.2+20100505/doc/<ipython console> in <module>()
/home/yoh/nipy/nipy-0.1.2+20100505/build/lib.linux-parisc64-2.5/nipy/neurospin/__init__.py
in <module>()
15 from numpy.testing import Tester
16
---> 17 import statistical_mapping
18 from registration import register, transform
19
/home/yoh/nipy/nipy-0.1.2+20100505/build/lib.linux-parisc64-2.5/nipy/neurospin/statistical_mapping.py
in <module>()
2 import scipy.stats as sp_stats
3
----> 4 from nipy.neurospin.graph.field import Field
5 from nipy.neurospin.image import apply_affine
6 from nipy.neurospin.utils import emp_null
/home/yoh/nipy/nipy-0.1.2+20100505/build/lib.linux-parisc64-2.5/nipy/neurospin/graph/__init__.py
in <module>()
2
3 from numpy.testing import Tester
4
5 test = Tester().test
6 bench = Tester().bench
/home/yoh/nipy/nipy-0.1.2+20100505/build/lib.linux-parisc64-2.5/nipy/neurospin/graph/graph.py
in <module>()
2 from _graph import __doc__
3 import numpy as np
4
5 """
6 This module implements the main graph classes of fff2
ImportError: /usr/lib/libatlas.so.3gf: undefined symbol:
__canonicalize_funcptr_for_compare
whenever
(sid)y...@paer:/home/yoh/nipy/nipy-0.1.2+20100505/doc$ objdump -t
/lib/libpthread.so.0 | grep __canonicalize_funcptr_for_compare
00018818 l F .text 00000114 .hidden
__canonicalize_funcptr_for_compare
is that the reason? having it '.hidden'?
-- System Information:
Debian Release: squeeze/sid
APT prefers unstable
APT policy: (901, 'unstable'), (900, 'testing'), (300, 'experimental')
Architecture: amd64 (x86_64)
Kernel: Linux 2.6.32-3-amd64 (SMP w/2 CPU cores)
Locale: LANG=en_US, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash
Versions of packages python-nipy depends on:
ii python 2.5.4-9 An interactive high-level object-o
ii python-nifti 0.20100412.1-1 Python interface to the NIfTI I/O
ii python-nipy-lib 0.1.2+20100505-1 Analysis of structural and functio
ii python-numpy 1:1.3.0-3+b1 Numerical Python adds a fast array
ii python-scipy 0.7.2-1 scientific tools for Python
ii python-support 1.0.8 automated rebuilding support for P
Versions of packages python-nipy recommends:
ii mayavi2 3.3.1-1 A scientific visualization package
ii python-matplotlib 0.99.1.2-3 Python based plotting system in a
Versions of packages python-nipy suggests:
ii python-mvpa 0.4.4-1 multivariate pattern analysis with
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: nipy
Source-Version: 0.1.2+20100526-1
We believe that the bug you reported is fixed in the latest version of
nipy, which is due to be installed in the Debian FTP archive:
nipy_0.1.2+20100526-1.debian.tar.gz
to main/n/nipy/nipy_0.1.2+20100526-1.debian.tar.gz
nipy_0.1.2+20100526-1.dsc
to main/n/nipy/nipy_0.1.2+20100526-1.dsc
nipy_0.1.2+20100526.orig.tar.gz
to main/n/nipy/nipy_0.1.2+20100526.orig.tar.gz
python-nipy-doc_0.1.2+20100526-1_all.deb
to main/n/nipy/python-nipy-doc_0.1.2+20100526-1_all.deb
python-nipy-lib-dbg_0.1.2+20100526-1_amd64.deb
to main/n/nipy/python-nipy-lib-dbg_0.1.2+20100526-1_amd64.deb
python-nipy-lib_0.1.2+20100526-1_amd64.deb
to main/n/nipy/python-nipy-lib_0.1.2+20100526-1_amd64.deb
python-nipy_0.1.2+20100526-1_all.deb
to main/n/nipy/python-nipy_0.1.2+20100526-1_all.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 581...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Yaroslav Halchenko <deb...@onerussian.com> (supplier of updated nipy package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Tue, 11 May 2010 21:17:20 -0400
Source: nipy
Binary: python-nipy python-nipy-lib python-nipy-lib-dbg python-nipy-doc
Architecture: source amd64 all
Version: 0.1.2+20100526-1
Distribution: unstable
Urgency: low
Maintainer: NeuroDebian Team <t...@neuro.debian.net>
Changed-By: Yaroslav Halchenko <deb...@onerussian.com>
Description:
python-nipy - Analysis of structural and functional neuroimaging data
python-nipy-doc - documention and examples for NiPy
python-nipy-lib - Analysis of structural and functional neuroimaging data
python-nipy-lib-dbg - Analysis of structural and functional neuroimaging data
Closes: 581204 581783
Changes:
nipy (0.1.2+20100526-1) unstable; urgency=low
.
* Fresh upstream snapshot -- needed a new orig.tar.gz since some
files were moved/removed
* Switching to dh from cdbs:
- Assure no documentation is built during binary-arch builds
(closes: #581204, #581783)
- Build for all supported Python versions
- Expanded Build-Depends with all necessary -dbg packages
(e.g. cython-dbg, python-all-dbg)
- Added dvipng into Build-Depends for avoiding problems during
documentation build
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Files:
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python-nipy-lib-dbg_0.1.2+20100526-1_amd64.deb
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python-nipy_0.1.2+20100526-1_all.deb
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