Your message dated Wed, 10 Feb 2010 21:39:08 +0000
with message-id <e1nfkh6-0001qq...@ries.debian.org>
and subject line Bug#568612: fixed in shogun 0.9.1-2
has caused the Debian Bug report #568612,
regarding shogun: FTBFS due to doxygen bug#564338
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
568612: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=568612
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: shogun
Version: 0.9.1-1
Severity: serious
Hi Soeren,
On this i386, building shogun fails:
[...]
| doxygen Classifier.doxy
[...]
| Could not create search results directory 'html/search/search'
| python2.5 ../.doxy2swig.py --quiet --no-function-definition \
| Classifier/doxygen_xml/index.xml Classifier_doxygen.i
| Traceback (most recent call last):
| File "../.doxy2swig.py", line 450, in <module>
| main()
| File "../.doxy2swig.py", line 446, in main
| convert(args[0], args[1], not options.func_def, options.quiet)
| File "../.doxy2swig.py", line 424, in convert
| p = Doxy2SWIG(input, include_function_definition, quiet)
| File "../.doxy2swig.py", line 70, in __init__
| f = my_open_read(src)
| File "../.doxy2swig.py", line 44, in my_open_read
| return open(source)
| IOError: [Errno 2] No such file or directory:
'Classifier/doxygen_xml/index.xml'
| make[2]: *** [Classifier_doxygen.i] Error 1
| make[2]: Leaving directory `/tmp/shogun-0.9.1/src/octave_modular'
| make[1]: *** [all] Error 2
| make[1]: Leaving directory `/tmp/shogun-0.9.1/src'
| make: *** [debian/stamp-build] Error 2
| dpkg-buildpackage: error: debian/rules build gave error exit status 2
>From http://bugs.debian.org/564338 I learn that this is due to a known
problem in doxygen, and the workaround is to add
SEARCHENGINE = NO
to the .doxy files in src/modular. Since doxygen is not fixed yet and
it is useful to be able to rebuild shogun, would it be possible to
implement this or some other workaround?
If there is anything I can help with to fix this, please let me know.
Jonathan
--- End Message ---
--- Begin Message ---
Source: shogun
Source-Version: 0.9.1-2
We believe that the bug you reported is fixed in the latest version of
shogun, which is due to be installed in the Debian FTP archive:
libshogun-dev_0.9.1-2_amd64.deb
to main/s/shogun/libshogun-dev_0.9.1-2_amd64.deb
libshogun6_0.9.1-2_amd64.deb
to main/s/shogun/libshogun6_0.9.1-2_amd64.deb
libshogunui-dev_0.9.1-2_amd64.deb
to main/s/shogun/libshogunui-dev_0.9.1-2_amd64.deb
libshogunui3_0.9.1-2_amd64.deb
to main/s/shogun/libshogunui3_0.9.1-2_amd64.deb
shogun-cmdline_0.9.1-2_amd64.deb
to main/s/shogun/shogun-cmdline_0.9.1-2_amd64.deb
shogun-dbg_0.9.1-2_amd64.deb
to main/s/shogun/shogun-dbg_0.9.1-2_amd64.deb
shogun-doc-cn_0.9.1-2_all.deb
to main/s/shogun/shogun-doc-cn_0.9.1-2_all.deb
shogun-doc-en_0.9.1-2_all.deb
to main/s/shogun/shogun-doc-en_0.9.1-2_all.deb
shogun-elwms_0.9.1-2_amd64.deb
to main/s/shogun/shogun-elwms_0.9.1-2_amd64.deb
shogun-octave-modular_0.9.1-2_amd64.deb
to main/s/shogun/shogun-octave-modular_0.9.1-2_amd64.deb
shogun-octave_0.9.1-2_amd64.deb
to main/s/shogun/shogun-octave_0.9.1-2_amd64.deb
shogun-python-modular_0.9.1-2_amd64.deb
to main/s/shogun/shogun-python-modular_0.9.1-2_amd64.deb
shogun-python_0.9.1-2_amd64.deb
to main/s/shogun/shogun-python_0.9.1-2_amd64.deb
shogun-r_0.9.1-2_amd64.deb
to main/s/shogun/shogun-r_0.9.1-2_amd64.deb
shogun_0.9.1-2.diff.gz
to main/s/shogun/shogun_0.9.1-2.diff.gz
shogun_0.9.1-2.dsc
to main/s/shogun/shogun_0.9.1-2.dsc
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 568...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Soeren Sonnenburg <so...@debian.org> (supplier of updated shogun package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 09 Feb 2010 09:27:18 +0100
Source: shogun
Binary: libshogun6 libshogun-dev libshogunui3 libshogunui-dev shogun-doc-en
shogun-doc-cn shogun-dbg shogun-python-modular shogun-python shogun-cmdline
shogun-octave-modular shogun-octave shogun-r shogun-elwms
Architecture: source all amd64
Version: 0.9.1-2
Distribution: unstable
Urgency: low
Maintainer: Soeren Sonnenburg <so...@debian.org>
Changed-By: Soeren Sonnenburg <so...@debian.org>
Description:
libshogun-dev - Large Scale Machine Learning Toolbox
libshogun6 - Large Scale Machine Learning Toolbox
libshogunui-dev - Large Scale Machine Learning Toolbox
libshogunui3 - Large Scale Machine Learning Toolbox
shogun-cmdline - Large Scale Machine Learning Toolbox
shogun-dbg - Large Scale Machine Learning Toolbox
shogun-doc-cn - Large Scale Machine Learning Toolbox
shogun-doc-en - Large Scale Machine Learning Toolbox
shogun-elwms - Large Scale Machine Learning Toolbox
shogun-octave - Large Scale Machine Learning Toolbox
shogun-octave-modular - Large Scale Machine Learning Toolbox
shogun-python - Large Scale Machine Learning Toolbox
shogun-python-modular - Large Scale Machine Learning Toolbox
shogun-r - Large Scale Machine Learning Toolbox
Closes: 568612 568825
Changes:
shogun (0.9.1-2) unstable; urgency=low
.
* Add support fro Renesas SH (thanks Nobuhiro Iwamatsu for the patch
configure.diff): (Closes: #568825)
* Workaround doxygen FTBS (patch doxygen.diff) (Closes: #568612)
* Apply upstream patches to limit training time in libsvm and mc svm
(patches libsvm_mc_time_limit.diff, libsvm_time_limit.diff)
* Apply upstream patch to fix get_kernel_matrix etc for custom kernels
(custom_kernel_init.diff)
* Apply upstream patch improving error message (hmm_observations.diff)
* Apply upstream patch correcting a wrong liblinear sign flip
(sign_flip_liblinear.diff)
* Bump standards version (no changes required).
Checksums-Sha1:
6a7c4f72ef926c27c1d04fbe886060be4a47a81f 2361 shogun_0.9.1-2.dsc
b88bde35080060cd3c46d2798108ebf02961b1aa 15435 shogun_0.9.1-2.diff.gz
ecb8950641f421f459517b724c25016651d1f0ca 7067884 shogun-doc-en_0.9.1-2_all.deb
c572d8c956642027b931bc41fd8f29e39a210192 7095956 shogun-doc-cn_0.9.1-2_all.deb
4e2ecc0e9242ec88d0d0179bec089698c3816a1f 728918 libshogun6_0.9.1-2_amd64.deb
b571a9c803d8d005cf6034cfb466c5da20d9f734 1336720
libshogun-dev_0.9.1-2_amd64.deb
fbbd91df275d2d57d590134e27baf7af25dc98f3 225120 libshogunui3_0.9.1-2_amd64.deb
0323f04c0d7d72a7083259dd255288ba9934f0fc 312882
libshogunui-dev_0.9.1-2_amd64.deb
4cab56ce937bd5efa088e68f6e3a8efdc603c426 23028568 shogun-dbg_0.9.1-2_amd64.deb
87bc588f74a5716b7808ba47d269c42d20437745 2599690
shogun-python-modular_0.9.1-2_amd64.deb
480e7966ff3e8549ccb78e77a9ea0951a66f201d 43424 shogun-python_0.9.1-2_amd64.deb
3da077d37df63c76792f56fbbbda75bd65f5a184 33594 shogun-cmdline_0.9.1-2_amd64.deb
6246a1bd374fce4166619b101ea77f8e0de7d7a2 4407150
shogun-octave-modular_0.9.1-2_amd64.deb
afad6844e2b36d50c21bf20ddf2626761bfad2b3 106706 shogun-octave_0.9.1-2_amd64.deb
1b6e1a6da35ced9ef39cd23c561c340968da0d23 51160 shogun-r_0.9.1-2_amd64.deb
de3c74169d5d8e4fa186b5af08d01026e59e5150 107694 shogun-elwms_0.9.1-2_amd64.deb
Checksums-Sha256:
13693a0a2dc33969e9fc149ed30d5227068c98bea324bd116339effb4f48300d 2361
shogun_0.9.1-2.dsc
d14abcc54bddeeca6d24c76e68955e966b1e98bcef951dbbc23cb0009e021117 15435
shogun_0.9.1-2.diff.gz
4d8357d7760479c251b573b9332b6dd06c3fb3b2a56fd582b0e597a0cf14a27c 7067884
shogun-doc-en_0.9.1-2_all.deb
0915c683bb8cd673a4bb735073c3a86bf1a40458241f26f76f00d3d45ba382ee 7095956
shogun-doc-cn_0.9.1-2_all.deb
0cc962e534b475093f4ee0990f1dadf44aded51c4d0760068a100ce7da3fcf63 728918
libshogun6_0.9.1-2_amd64.deb
bfe4d34b46d1dae6076a2ad3251becb0189e4d00f70db24e27645d146ff78852 1336720
libshogun-dev_0.9.1-2_amd64.deb
4322d4b1d9a675cc6237e9dd7a9b18caf01abd3704c6e5bf81f2acafc0bae90a 225120
libshogunui3_0.9.1-2_amd64.deb
b26c8e7abd414cdacbec6a1fc2ce323839c560a7bc8a57c222a7f7fc0b80b573 312882
libshogunui-dev_0.9.1-2_amd64.deb
7f1c57a9febf11a372c511caaf773deab9d4d608a120b2b35c50a3fb098f5806 23028568
shogun-dbg_0.9.1-2_amd64.deb
d67c9436d3d1d00e7531958b772622abd1b1f0a61f828145f402d0ef5183c30c 2599690
shogun-python-modular_0.9.1-2_amd64.deb
8beb354ee2092f6fe950880590d8a685dcf38dac15f879cdf0f9ffead085cbc0 43424
shogun-python_0.9.1-2_amd64.deb
dda26da7fb50d16ac270f0f549914cd98b791f02c954753a1db71aa1c3737807 33594
shogun-cmdline_0.9.1-2_amd64.deb
4a30aafca90f09f85d0aacd8a8dccb8f603ad75d3878fa1de9c83f33ed9af1cf 4407150
shogun-octave-modular_0.9.1-2_amd64.deb
371141a127022bcab571655a9bef500c27606bc8c867c00c2c061b22af1b366d 106706
shogun-octave_0.9.1-2_amd64.deb
f3b611c35c8f114938a4a12ac94a2ffeeade9d79178c354a68319f9e19fb13af 51160
shogun-r_0.9.1-2_amd64.deb
8418a20a822122642dd8b78b411e722c11b1843285314287de4ffe7b059d247a 107694
shogun-elwms_0.9.1-2_amd64.deb
Files:
43cb6ea08d0b3a9ca8e1ccb2f584c830 2361 science optional shogun_0.9.1-2.dsc
2f746f0cbb10dd3de109f1e4ede83210 15435 science optional shogun_0.9.1-2.diff.gz
39eff396ac19d902435bbee81863718c 7067884 doc optional
shogun-doc-en_0.9.1-2_all.deb
f7096f0d2cedf89c9fc3370fcd5a11c0 7095956 doc optional
shogun-doc-cn_0.9.1-2_all.deb
2a0f947dced386d6ab8bbdd54cc6afeb 728918 libs optional
libshogun6_0.9.1-2_amd64.deb
21aef58909a609bd2f0cec1bc7e15205 1336720 libdevel optional
libshogun-dev_0.9.1-2_amd64.deb
912245bc0e406f51a40d191aaa177481 225120 libs optional
libshogunui3_0.9.1-2_amd64.deb
0cfae03fe6dd5ad6af3fc21c9788f168 312882 libdevel optional
libshogunui-dev_0.9.1-2_amd64.deb
c31c3a6dae73b025e2b45e72d1d57bfd 23028568 debug extra
shogun-dbg_0.9.1-2_amd64.deb
1c7010895a2de941c16619b2e7b7aec0 2599690 science optional
shogun-python-modular_0.9.1-2_amd64.deb
c98d66704297546ebce3fa8c721dfe28 43424 science optional
shogun-python_0.9.1-2_amd64.deb
582ae5b8de55e87460d8cdd9b3924ee2 33594 science optional
shogun-cmdline_0.9.1-2_amd64.deb
f6d302989c8d27f5e65e7a901a2a1739 4407150 science optional
shogun-octave-modular_0.9.1-2_amd64.deb
837c1f3162661aaba16e78a35832c1d6 106706 science optional
shogun-octave_0.9.1-2_amd64.deb
77150ae5bc9e81c7012d1d4ae42bf3fe 51160 science optional
shogun-r_0.9.1-2_amd64.deb
a7644d9896662dc809668fab2b837e99 107694 science optional
shogun-elwms_0.9.1-2_amd64.deb
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.9 (GNU/Linux)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=zTFR
-----END PGP SIGNATURE-----
--- End Message ---
